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| void | vg::algorithms::expand_subgraph_by_steps (const HandleGraph &source, MutableHandleGraph &subgraph, const uint64_t &steps, bool forward_only=false) |
| | expand the subgraph iteratively for this many steps More...
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| void | vg::algorithms::expand_subgraph_to_node_count (const HandleGraph &source, MutableHandleGraph &subgraph, const uint64_t &node_count, bool forward_only=false) |
| | expand the subgraph iteratively until its node count is at least node_count More...
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| void | vg::algorithms::expand_subgraph_by_length (const HandleGraph &source, MutableHandleGraph &subgraph, const uint64_t &length, bool forward_only=false) |
| | expand the subgraph iteratively to include at least length new sequence More...
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| void | vg::algorithms::expand_subgraph_to_length (const HandleGraph &source, MutableHandleGraph &subgraph, const uint64_t &length, bool forward_only=false) |
| | expand the subgraph iterativel until its total sequence length is greater than length More...
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| void | vg::algorithms::extract_context (const HandleGraph &source, MutableHandleGraph &subgraph, const handle_t &handle, const uint64_t &offset, const uint64_t &length, bool fwd, bool rev) |
| | expand the context around a single handle position More...
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| void | vg::algorithms::extract_id_range (const HandleGraph &source, const nid_t &id1, const nid_t &id2, MutableHandleGraph &subgraph) |
| | extract the node id range More...
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| void | vg::algorithms::extract_path_range (const PathPositionHandleGraph &source, path_handle_t path_handle, int64_t start, int64_t end, MutableHandleGraph &subgraph) |
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| void | vg::algorithms::add_subpaths_to_subgraph (const PathPositionHandleGraph &source, MutablePathHandleGraph &subgraph) |
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| void | vg::algorithms::add_connecting_edges_to_subgraph (const HandleGraph &source, MutableHandleGraph &subgraph) |
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