aligner.cpp File Reference

#include "aligner.hpp"
#include "hash_map.hpp"
#include "alignment.hpp"
#include "path.hpp"
#include "utility.hpp"
#include "statistics.hpp"
#include "banded_global_aligner.hpp"
#include "reverse_graph.hpp"
#include "null_masking_graph.hpp"
#include "dozeu_pinning_overlay.hpp"
#include "crash.hpp"
#include "algorithms/distance_to_tail.hpp"

Namespaces
	vg

Functions
int32_t	vg::score_gap (size_t gap_length, int32_t gap_open, int32_t gap_extension)
	Score a gap with the given open and extension scores. More...