alignment_emitter.cpp File Reference

#include "vg/io/alignment_emitter.hpp"
#include "vg/io/alignment_io.hpp"
#include "vg/io/json2pb.h"
#include "vg/io/hfile_cppstream.hpp"
#include "vg/io/stream.hpp"
#include <omp.h>
#include <sstream>

Namespaces
	vg
	vg::io

Functions
unique_ptr< AlignmentEmitter >	vg::io::get_non_hts_alignment_emitter (const string &filename, const string &format, const map< string, int64_t > &path_length, size_t max_threads, const HandleGraph *graph, const handlegraph::NamedNodeBackTranslation *translate_through)

Detailed Description

Implements a system for emitting alignments and groups of alignments in multiple formats.