build_index.hpp File Reference

#include <vg/vg.pb.h>
#include <iostream>
#include "handle.hpp"
#include "gcsa/gcsa.h"
#include "gcsa/lcp.h"
#include "kmer.hpp"

Namespaces
	vg

Functions
void	vg::build_gcsa_lcp (const HandleGraph &graph, gcsa::GCSA *&gcsa, gcsa::LCPArray *&lcp, int kmer_size, size_t doubling_steps, size_t size_limit, const string &base_file_name)

Detailed Description

Functions for building GCSA2/LCP indexes from HandleGraphs