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vg
tools for working with variation graphs
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This is the complete list of members for vg::AlignerClient, including all inherited members.
| adjust_alignments_for_base_quality | vg::AlignerClient | |
| AlignerClient(double gc_content_estimate=vg::default_gc_content) | vg::AlignerClient | protected |
| gc_content_estimate | vg::AlignerClient | protected |
| get_aligner(bool have_qualities=true) const | vg::AlignerClient | protected |
| get_qual_adj_aligner() const | vg::AlignerClient | protected |
| get_regular_aligner() const | vg::AlignerClient | protected |
| parse_matrix(std::istream &matrix_stream) | vg::AlignerClient | static |
| qual_adj_aligner | vg::AlignerClient | private |
| regular_aligner | vg::AlignerClient | private |
| set_alignment_scores(int8_t match, int8_t mismatch, int8_t gap_open, int8_t gap_extend, int8_t full_length_bonus) | vg::AlignerClient | virtual |
| set_alignment_scores(std::istream &matrix_stream, int8_t gap_open, int8_t gap_extend, int8_t full_length_bonus) | vg::AlignerClient | virtual |
| set_alignment_scores(const int8_t *score_matrix, int8_t gap_open, int8_t gap_extend, int8_t full_length_bonus) | vg::AlignerClient | virtual |
1.8.17