vg::AlignerClient Member List

This is the complete list of members for vg::AlignerClient, including all inherited members.

adjust_alignments_for_base_quality	vg::AlignerClient
AlignerClient(double gc_content_estimate=vg::default_gc_content)	vg::AlignerClient	protected
gc_content_estimate	vg::AlignerClient	private
get_aligner(bool have_qualities=true) const	vg::AlignerClient	protected
get_qual_adj_aligner() const	vg::AlignerClient	protected
get_regular_aligner() const	vg::AlignerClient	protected
parse_matrix(std::istream &matrix_stream)	vg::AlignerClient	static
qual_adj_aligner	vg::AlignerClient	private
regular_aligner	vg::AlignerClient	private
set_alignment_scores(int8_t match, int8_t mismatch, int8_t gap_open, int8_t gap_extend, int8_t full_length_bonus)	vg::AlignerClient	virtual
set_alignment_scores(std::istream &matrix_stream, int8_t gap_open, int8_t gap_extend, int8_t full_length_bonus)	vg::AlignerClient	virtual
set_alignment_scores(const int8_t *score_matrix, int8_t gap_open, int8_t gap_extend, int8_t full_length_bonus)	vg::AlignerClient	virtual