This is the complete list of members for vg::AlignmentChainModel, including all inherited members.

AlignmentChainModel(vector< vector< Alignment > > &bands, Mapper *mapper, const function< double(const Alignment &, const Alignment &, const unordered_map< path_handle_t, vector< pair< size_t, bool > > > &, const unordered_map< path_handle_t, vector< pair< size_t, bool > > > &, int64_t)> &transition_weight, int vertex_band_width=10, int position_depth=1, int max_connections=30)	vg::AlignmentChainModel
clear_scores(void)	vg::AlignmentChainModel
display(ostream &out)	vg::AlignmentChainModel
display_dot(ostream &out, vector< AlignmentChainModelVertex * > vertex_trace)	vg::AlignmentChainModel
max_vertex(void)	vg::AlignmentChainModel
model	vg::AlignmentChainModel
positions	vg::AlignmentChainModel
redundant_vertexes	vg::AlignmentChainModel
score(const unordered_set< AlignmentChainModelVertex * > &exclude)	vg::AlignmentChainModel
traceback(const Alignment &read, int alt_alns, bool paired, bool debug)	vg::AlignmentChainModel
unaligned_bands	vg::AlignmentChainModel