| alt_tracebacks | vg::BandedGlobalAligner< IntType >::AltTracebackStack | private |
| AltTracebackStack(const HandleGraph &graph, int64_t max_multi_alns, int32_t empty_score, unordered_set< BAMatrix * > &source_node_matrices, unordered_set< BAMatrix * > &sink_node_matrices, int8_t gap_open, int8_t gap_extend, IntType min_inf) | vg::BandedGlobalAligner< IntType >::AltTracebackStack | |
| at_next_deflection(int64_t node_id, int64_t row_idx, int64_t col_idx) | vg::BandedGlobalAligner< IntType >::AltTracebackStack | inline |
| curr_deflxn | vg::BandedGlobalAligner< IntType >::AltTracebackStack | private |
| curr_traceback | vg::BandedGlobalAligner< IntType >::AltTracebackStack | private |
| current_empty_prefix() | vg::BandedGlobalAligner< IntType >::AltTracebackStack | inline |
| current_traceback_score() | vg::BandedGlobalAligner< IntType >::AltTracebackStack | inline |
| deflect_to_matrix() | vg::BandedGlobalAligner< IntType >::AltTracebackStack | inline |
| deflect_to_matrix(int64_t &to_node_id) | vg::BandedGlobalAligner< IntType >::AltTracebackStack | inline |
| empty_full_paths | vg::BandedGlobalAligner< IntType >::AltTracebackStack | private |
| empty_score | vg::BandedGlobalAligner< IntType >::AltTracebackStack | private |
| get_alignment_start(int64_t &node_id, matrix_t &matrix) | vg::BandedGlobalAligner< IntType >::AltTracebackStack | inline |
| graph | vg::BandedGlobalAligner< IntType >::AltTracebackStack | private |
| has_next() | vg::BandedGlobalAligner< IntType >::AltTracebackStack | inline |
| insert_traceback(const vector< Deflection > &traceback_prefix, const IntType score, const int64_t from_node_id, const int64_t row_idx, const int64_t col_idx, const int64_t to_node_id, const matrix_t to_matrix, const list< int64_t > &empty_node_prefix) | vg::BandedGlobalAligner< IntType >::AltTracebackStack | inlineprivate |
| max_multi_alns | vg::BandedGlobalAligner< IntType >::AltTracebackStack | private |
| next_empty_alignment(Alignment &alignment) | vg::BandedGlobalAligner< IntType >::AltTracebackStack | inline |
| next_is_empty() | vg::BandedGlobalAligner< IntType >::AltTracebackStack | inline |
| next_traceback_alignment() | vg::BandedGlobalAligner< IntType >::AltTracebackStack | inline |
| propose_deflection(const IntType score, const int64_t from_node_id, const int64_t row_idx, const int64_t col_idx, const int64_t to_node_id, const matrix_t to_matrix) | vg::BandedGlobalAligner< IntType >::AltTracebackStack | inline |
| ~AltTracebackStack() | vg::BandedGlobalAligner< IntType >::AltTracebackStack | |
