vg
tools for working with variation graphs
vg::BandedGlobalAligner< IntType >::BABuilder Member List

This is the complete list of members for vg::BandedGlobalAligner< IntType >::BABuilder, including all inherited members.

alignmentvg::BandedGlobalAligner< IntType >::BABuilderprivate
BABuilder(Alignment &alignment)vg::BandedGlobalAligner< IntType >::BABuilder
current_node_idvg::BandedGlobalAligner< IntType >::BABuilderprivate
current_node_sequencevg::BandedGlobalAligner< IntType >::BABuilderprivate
edit_lengthvg::BandedGlobalAligner< IntType >::BABuilderprivate
edit_read_end_idxvg::BandedGlobalAligner< IntType >::BABuilderprivate
finalize_alignment(const list< int64_t > &empty_prefix)vg::BandedGlobalAligner< IntType >::BABuilder
finish_current_edit()vg::BandedGlobalAligner< IntType >::BABuilderprivate
finish_current_node()vg::BandedGlobalAligner< IntType >::BABuilderprivate
mapping_editsvg::BandedGlobalAligner< IntType >::BABuilderprivate
matchingvg::BandedGlobalAligner< IntType >::BABuilderprivate
matrix_statevg::BandedGlobalAligner< IntType >::BABuilderprivate
node_mappingsvg::BandedGlobalAligner< IntType >::BABuilderprivate
update_state(const HandleGraph &graph, matrix_t matrix, const handle_t &node, int64_t read_idx, int64_t node_idx, bool empty_node_seq=false)vg::BandedGlobalAligner< IntType >::BABuilder
~BABuilder()vg::BandedGlobalAligner< IntType >::BABuilder
Generated by   doxygen 1.8.17