vg::DeletionAligner Member List

This is the complete list of members for vg::DeletionAligner, including all inherited members.

align(Alignment &aln, const HandleGraph &graph) const	vg::DeletionAligner
align_multi(Alignment &aln, vector< Alignment > &alt_alns, const HandleGraph &graph, int32_t max_alt_alns) const	vg::DeletionAligner
DeletionAligner(int8_t gap_open, int8_t gap_extension)	vg::DeletionAligner
DeletionAligner()=default	vg::DeletionAligner
gap_extension	vg::DeletionAligner	private
gap_open	vg::DeletionAligner	private
min_dists(const vector< handle_t > &order, const unordered_map< handle_t, size_t > &index_of, const HandleGraph &graph) const	vg::DeletionAligner	private
run_dp(const HandleGraph &graph, int32_t max_tracebacks) const	vg::DeletionAligner	private
trace_to_alignment(Alignment &aln, const vector< handle_t > &trace, const HandleGraph &graph) const	vg::DeletionAligner	private
traceback(const vector< handle_t > &order, const unordered_map< handle_t, size_t > &index_of, const HandleGraph &graph, const vector< size_t > &dists, const vector< pair< size_t, size_t >> &sinks, size_t max_tracebacks) const	vg::DeletionAligner	private
~DeletionAligner()=default	vg::DeletionAligner