vg
tools for working with variation graphs
vg::GAFOutputCaller Member List

This is the complete list of members for vg::GAFOutputCaller, including all inherited members.

emit_gaf_traversals(const PathHandleGraph &graph, const string &snarl_name, const vector< SnarlTraversal > &travs, int64_t ref_trav_idx, const string &ref_path_name, int64_t ref_path_position, const TraversalSupportFinder *support_finder=nullptr)vg::GAFOutputCaller
emit_gaf_variant(const PathHandleGraph &graph, const string &snarl_name, const vector< SnarlTraversal > &travs, const vector< int > &genotype, int64_t ref_trav_idx, const string &ref_path_name, int64_t ref_path_position, const TraversalSupportFinder *support_finder=nullptr)vg::GAFOutputCaller
emittervg::GAFOutputCallerprotected
gaf_sample_namevg::GAFOutputCallerprotected
GAFOutputCaller(AlignmentEmitter *emitter, const string &sample_name, const vector< string > &ref_paths, size_t trav_padding)vg::GAFOutputCaller
pad_traversal(const PathHandleGraph &graph, const SnarlTraversal &trav) constvg::GAFOutputCaller
ref_pathsvg::GAFOutputCallerprotected
trav_paddingvg::GAFOutputCallerprotected
~GAFOutputCaller()vg::GAFOutputCallervirtual
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