vg
tools for working with variation graphs
vg::GaplessExtender Member List

This is the complete list of members for vg::GaplessExtender, including all inherited members.

alignervg::GaplessExtender
cluster_type typedefvg::GaplessExtender
extend(cluster_type &cluster, std::string sequence, const gbwtgraph::CachedGBWTGraph *cache=nullptr, size_t max_mismatches=MAX_MISMATCHES, double overlap_threshold=OVERLAP_THRESHOLD, bool trim=true) constvg::GaplessExtender
full_length_extensions(const std::vector< GaplessExtension > &result, size_t max_mismatches=MAX_MISMATCHES)vg::GaplessExtenderstatic
GaplessExtender()vg::GaplessExtender
GaplessExtender(const gbwtgraph::GBWTGraph &graph, const Aligner &aligner)vg::GaplessExtender
get_handle(seed_type seed)vg::GaplessExtenderinlinestatic
get_node_offset(seed_type seed)vg::GaplessExtenderinlinestatic
get_pos(seed_type seed)vg::GaplessExtenderinlinestatic
get_read_offset(seed_type seed)vg::GaplessExtenderinlinestatic
graphvg::GaplessExtender
maskvg::GaplessExtender
MAX_MISMATCHESvg::GaplessExtenderstatic
OVERLAP_THRESHOLDvg::GaplessExtenderstatic
seed_type typedefvg::GaplessExtender
to_seed(pos_t pos, size_t read_offset)vg::GaplessExtenderinlinestatic
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