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vg
tools for working with variation graphs
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This is the complete list of members for vg::GenomeState, including all inherited members.
| append_haplotype(const AppendHaplotypeCommand &c) | vg::GenomeState | |
| backing_graph | vg::GenomeState | protected |
| count_haplotypes(const pair< const Snarl *, const Snarl * > &telomere_pair) const | vg::GenomeState | |
| count_haplotypes(const Snarl *snarl) const | vg::GenomeState | |
| delete_haplotype(const DeleteHaplotypeCommand &c) | vg::GenomeState | |
| dump() const | vg::GenomeState | |
| execute(GenomeStateCommand *command) | vg::GenomeState | |
| GenomeState(const SnarlManager &manager, const HandleGraph *graph, const unordered_set< pair< const Snarl *, const Snarl * >> telomeres) | vg::GenomeState | |
| get_net_graph(const Snarl *snarl) | vg::GenomeState | |
| insert_handles(const vector< handle_t > &to_add, unordered_map< const Snarl *, vector< size_t >> &lanes_added, size_t top_lane=numeric_limits< size_t >::max()) | vg::GenomeState | protected |
| insert_haplotype(const InsertHaplotypeCommand &c) | vg::GenomeState | |
| manager | vg::GenomeState | protected |
| net_graphs | vg::GenomeState | protected |
| replace_local_haplotype(const ReplaceLocalHaplotypeCommand &c) | vg::GenomeState | |
| replace_snarl_haplotype(const ReplaceSnarlHaplotypeCommand &c) | vg::GenomeState | |
| state | vg::GenomeState | protected |
| swap_haplotypes(const SwapHaplotypesCommand &c) | vg::GenomeState | |
| telomeres | vg::GenomeState | protected |
| trace_haplotype(const pair< const Snarl *, const Snarl * > &telomere_pair, size_t overall_lane, const function< void(const handle_t &)> &iteratee) const | vg::GenomeState |
1.8.17