vg
tools for working with variation graphs
vg::HTSWriter Member List

This is the complete list of members for vg::HTSWriter, including all inherited members.

atomic_headervg::HTSWriterprotected
backing_filesvg::HTSWriterprotected
BGZF_FOOTER_LENGTHvg::HTSWriterprotectedstatic
ensure_header(const string &read_group, const string &sample_name, size_t thread_number)vg::HTSWriterprotected
formatvg::HTSWriterprotected
header_mutexvg::HTSWriterprotected
hts_modevg::HTSWriterprotected
HTSWriter(const string &filename, const string &format, const vector< pair< string, int64_t >> &path_order_and_length, const unordered_map< string, int64_t > &subpath_to_length, size_t max_threads)vg::HTSWriter
HTSWriter(const HTSWriter &other)=deletevg::HTSWriter
HTSWriter(HTSWriter &&other)=deletevg::HTSWriter
initialize_sam_file(bam_hdr_t *header, size_t thread_number, bool keep_header=false)vg::HTSWriterprotected
multiplexervg::HTSWriterprotected
operator=(const HTSWriter &other)=deletevg::HTSWriter
operator=(HTSWriter &&other)=deletevg::HTSWriter
out_filevg::HTSWriterprotected
output_is_bgzfvg::HTSWriterprotected
path_order_and_lengthvg::HTSWriterprotected
sam_filesvg::HTSWriterprotected
sam_headervg::HTSWriterprotected
save_records(bam_hdr_t *header, vector< bam1_t * > &records, size_t thread_number)vg::HTSWriterprotected
subpath_to_lengthvg::HTSWriterprotected
~HTSWriter()vg::HTSWriter