vg
tools for working with variation graphs
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This is the complete list of members for vg::HTSWriter, including all inherited members.
atomic_header | vg::HTSWriter | protected |
backing_files | vg::HTSWriter | protected |
BGZF_FOOTER_LENGTH | vg::HTSWriter | protectedstatic |
ensure_header(const string &read_group, const string &sample_name, size_t thread_number) | vg::HTSWriter | protected |
format | vg::HTSWriter | protected |
header_mutex | vg::HTSWriter | protected |
hts_mode | vg::HTSWriter | protected |
HTSWriter(const string &filename, const string &format, const vector< pair< string, int64_t >> &path_order_and_length, const unordered_map< string, int64_t > &subpath_to_length, size_t max_threads) | vg::HTSWriter | |
HTSWriter(const HTSWriter &other)=delete | vg::HTSWriter | |
HTSWriter(HTSWriter &&other)=delete | vg::HTSWriter | |
initialize_sam_file(bam_hdr_t *header, size_t thread_number, bool keep_header=false) | vg::HTSWriter | protected |
multiplexer | vg::HTSWriter | protected |
operator=(const HTSWriter &other)=delete | vg::HTSWriter | |
operator=(HTSWriter &&other)=delete | vg::HTSWriter | |
out_file | vg::HTSWriter | protected |
output_is_bgzf | vg::HTSWriter | protected |
path_order_and_length | vg::HTSWriter | protected |
sam_files | vg::HTSWriter | protected |
sam_header | vg::HTSWriter | protected |
save_records(bam_hdr_t *header, vector< bam1_t * > &records, size_t thread_number) | vg::HTSWriter | protected |
subpath_to_length | vg::HTSWriter | protected |
~HTSWriter() | vg::HTSWriter |