This is the complete list of members for vg::HaplotypeIndexer, including all inherited members.
| batch_file_prefix | vg::HaplotypeIndexer | |
| build_gbwt(const std::vector< std::string > &vcf_parse_files, const std::string &job_name="GBWT", const PathHandleGraph *graph=nullptr, const std::unordered_set< path_handle_t > *paths=nullptr, bool skip_unvisited_paths=false) const | vg::HaplotypeIndexer | |
| build_gbwt(const PathHandleGraph &graph) const | vg::HaplotypeIndexer | |
| build_gbwt(const HandleGraph &graph, const std::vector< std::string > &aln_filenames, const std::string &aln_format, size_t parallel_jobs=1) const | vg::HaplotypeIndexer | |
| create_progress(const string &message, long count) | vg::Progressive | |
| create_progress(long count) | vg::Progressive | |
| destroy_progress(void) | vg::Progressive | |
| discard_overlaps | vg::HaplotypeIndexer | |
| ensure_progress(long count) | vg::Progressive | |
| excluded_samples | vg::HaplotypeIndexer | |
| force_phasing | vg::HaplotypeIndexer | |
| gbwt_buffer_size | vg::HaplotypeIndexer | |
| HaplotypeIndexer() | vg::HaplotypeIndexer | |
| id_interval | vg::HaplotypeIndexer | |
| increment_progress() | vg::Progressive | |
| last_progress | vg::Progressive | private |
| max_missing_variant_warnings | vg::HaplotypeIndexer | |
| parse_vcf(const std::string &filename, const PathHandleGraph &graph, const std::string &job_name="GBWT") const | vg::HaplotypeIndexer | |
| parse_vcf(const std::string &filename, const PathHandleGraph &graph, const std::vector< path_handle_t > &paths, const std::string &job_name="GBWT") const | vg::HaplotypeIndexer | |
| path_to_vcf | vg::HaplotypeIndexer | |
| phase_homozygous | vg::HaplotypeIndexer | |
| preload_progress(const string &message) | vg::Progressive | |
| progress | vg::Progressive | private |
| progress_count | vg::Progressive | private |
| progress_message | vg::Progressive | private |
| progress_seen | vg::Progressive | private |
| regions | vg::HaplotypeIndexer | |
| rename_variants | vg::HaplotypeIndexer | |
| sample_range | vg::HaplotypeIndexer | |
| samples_in_batch | vg::HaplotypeIndexer | |
| show_progress | vg::Progressive | |
| update_progress(long i) | vg::Progressive | |
| warn_on_missing_variants | vg::HaplotypeIndexer | |
| with_progress(bool show_progress, const std::string &task, const std::function< void(const std::function< void(size_t, size_t)> &progress)> &callback) | vg::Progressive | static |
