vg::HaplotypeIndexer Member List

This is the complete list of members for vg::HaplotypeIndexer, including all inherited members.

batch_file_prefix	vg::HaplotypeIndexer
build_gbwt(const std::vector< std::string > &vcf_parse_files, const std::string &job_name="GBWT", const PathHandleGraph *graph=nullptr, const std::unordered_set< path_handle_t > *paths=nullptr, bool skip_unvisited_paths=false) const	vg::HaplotypeIndexer
build_gbwt(const PathHandleGraph &graph) const	vg::HaplotypeIndexer
build_gbwt(const HandleGraph &graph, const std::vector< std::string > &aln_filenames, const std::string &aln_format, size_t parallel_jobs=1) const	vg::HaplotypeIndexer
create_progress(const string &message, long count)	vg::Progressive
create_progress(long count)	vg::Progressive
destroy_progress(void)	vg::Progressive
discard_overlaps	vg::HaplotypeIndexer
excluded_samples	vg::HaplotypeIndexer
force_phasing	vg::HaplotypeIndexer
gbwt_buffer_size	vg::HaplotypeIndexer
HaplotypeIndexer()	vg::HaplotypeIndexer
id_interval	vg::HaplotypeIndexer
increment_progress()	vg::Progressive
last_progress	vg::Progressive	private
max_missing_variant_warnings	vg::HaplotypeIndexer
parse_vcf(const std::string &filename, const PathHandleGraph &graph, const std::string &job_name="GBWT") const	vg::HaplotypeIndexer
parse_vcf(const std::string &filename, const PathHandleGraph &graph, const std::vector< path_handle_t > &paths, const std::string &job_name="GBWT") const	vg::HaplotypeIndexer
path_to_vcf	vg::HaplotypeIndexer
phase_homozygous	vg::HaplotypeIndexer
preload_progress(const string &message)	vg::Progressive
progress	vg::Progressive	private
progress_count	vg::Progressive	private
progress_message	vg::Progressive	private
progress_seen	vg::Progressive	private
regions	vg::HaplotypeIndexer
rename_variants	vg::HaplotypeIndexer
sample_range	vg::HaplotypeIndexer
samples_in_batch	vg::HaplotypeIndexer
show_progress	vg::Progressive
update_progress(long i)	vg::Progressive
warn_on_missing_variants	vg::HaplotypeIndexer