vg::HaplotypePartitioner Member List

This is the complete list of members for vg::HaplotypePartitioner, including all inherited members.

APPROXIMATE_JOBS	vg::HaplotypePartitioner	static
build_subchains(const gbwtgraph::TopLevelChain &chain, Haplotypes::TopLevelChain &output, const Parameters &parameters) const	vg::HaplotypePartitioner	private
contains_reversals(handle_t handle) const	vg::HaplotypePartitioner	private
distance_index	vg::HaplotypePartitioner
fragment_map	vg::HaplotypePartitioner
gbz	vg::HaplotypePartitioner
get_distance(handle_t from, handle_t to) const	vg::HaplotypePartitioner	private
get_sequences(handle_t handle) const	vg::HaplotypePartitioner	private
get_sequences(Subchain subchain) const	vg::HaplotypePartitioner	private
get_subchains(const gbwtgraph::TopLevelChain &chain, const Parameters &parameters) const	vg::HaplotypePartitioner	private
HaplotypePartitioner(const gbwtgraph::GBZ &gbz, const gbwt::FastLocate &r_index, const SnarlDistanceIndex &distance_index, const minimizer_index_type &minimizer_index, Verbosity verbosity)	vg::HaplotypePartitioner
kmer_type typedef	vg::HaplotypePartitioner
minimizer_index	vg::HaplotypePartitioner
minimizer_index_type typedef	vg::HaplotypePartitioner
partition_haplotypes(const Parameters &parameters) const	vg::HaplotypePartitioner
r_index	vg::HaplotypePartitioner
sequence_type typedef	vg::HaplotypePartitioner
SUBCHAIN_LENGTH	vg::HaplotypePartitioner	static
unique_minimizers(gbwt::size_type sequence_id) const	vg::HaplotypePartitioner	private
unique_minimizers(sequence_type sequence, Subchain subchain, size_t &fragments) const	vg::HaplotypePartitioner	private
Verbosity typedef	vg::HaplotypePartitioner
verbosity	vg::HaplotypePartitioner