vg
tools for working with variation graphs
vg::Haplotypes Member List

This is the complete list of members for vg::Haplotypes, including all inherited members.

assign_reference_paths(const gbwtgraph::GBZ &gbz, const gbwt::FragmentMap &fragment_map, Verbosity verbosity) constvg::Haplotypes
chainsvg::Haplotypes
compact_sequence_type typedefvg::Haplotypes
components() constvg::Haplotypesinline
headervg::Haplotypes
jobs() constvg::Haplotypesinline
jobs_for_cached_pathsvg::Haplotypes
k() constvg::Haplotypesinline
kmer_counts(const std::string &kff_file, Verbosity verbosity) constvg::Haplotypes
kmers() constvg::Haplotypesinline
load_from(const std::string &filename)vg::Haplotypes
sequence_type typedefvg::Haplotypes
serialize_to(const std::string &filename) constvg::Haplotypes
simple_sds_load(std::istream &in)vg::Haplotypes
simple_sds_serialize(std::ostream &out) constvg::Haplotypes
simple_sds_size() constvg::Haplotypes
Verbosity enum namevg::Haplotypes
verbosity_basic enum valuevg::Haplotypes
verbosity_debug enum valuevg::Haplotypes
verbosity_detailed enum valuevg::Haplotypes
verbosity_extra_debug enum valuevg::Haplotypes
verbosity_silent enum valuevg::Haplotypes