vg
tools for working with variation graphs
vg
Haplotypes
vg::Haplotypes Member List
This is the complete list of members for
vg::Haplotypes
, including all inherited members.
assign_reference_paths
(const gbwtgraph::GBZ &gbz, const gbwt::FragmentMap &fragment_map, Verbosity verbosity) const
vg::Haplotypes
chains
vg::Haplotypes
compact_sequence_type
typedef
vg::Haplotypes
components
() const
vg::Haplotypes
inline
header
vg::Haplotypes
jobs
() const
vg::Haplotypes
inline
jobs_for_cached_paths
vg::Haplotypes
k
() const
vg::Haplotypes
inline
kmer_counts
(const std::string &kff_file, Verbosity verbosity) const
vg::Haplotypes
kmers
() const
vg::Haplotypes
inline
load_from
(const std::string &filename)
vg::Haplotypes
sequence_type
typedef
vg::Haplotypes
serialize_to
(const std::string &filename) const
vg::Haplotypes
simple_sds_load
(std::istream &in)
vg::Haplotypes
simple_sds_serialize
(std::ostream &out) const
vg::Haplotypes
simple_sds_size
() const
vg::Haplotypes
Verbosity
enum name
vg::Haplotypes
verbosity_basic
enum value
vg::Haplotypes
verbosity_debug
enum value
vg::Haplotypes
verbosity_detailed
enum value
vg::Haplotypes
verbosity_extra_debug
enum value
vg::Haplotypes
verbosity_silent
enum value
vg::Haplotypes
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