vg
tools for working with variation graphs
vg::IncrementalSubgraph Member List

This is the complete list of members for vg::IncrementalSubgraph, including all inherited members.

edge_handle(const handle_t &left, const handle_t &right) consthandlegraph::HandleGraph
extend()vg::IncrementalSubgraph
extract_leftvg::IncrementalSubgraphprivate
extractedvg::IncrementalSubgraphprivate
extracting_left() constvg::IncrementalSubgraph
flip(const handle_t &handle) constvg::IncrementalSubgraphvirtual
follow_edges(const handle_t &handle, bool go_left, const Iteratee &iteratee) consthandlegraph::HandleGraph
follow_edges_impl(const handle_t &handle, bool go_left, const function< bool(const handle_t &)> &iteratee) constvg::IncrementalSubgraph
handlegraph::ExpandingOverlayGraph::follow_edges_impl(const handle_t &handle, bool go_left, const std::function< bool(const handle_t &)> &iteratee) const =0handlegraph::HandleGraphprotectedpure virtual
for_each_edge(const Iteratee &iteratee, bool parallel=false) consthandlegraph::HandleGraph
for_each_handle(const Iteratee &iteratee, bool parallel=false) consthandlegraph::HandleGraph
for_each_handle_impl(const function< bool(const handle_t &)> &iteratee, bool parallel=false) constvg::IncrementalSubgraph
handlegraph::ExpandingOverlayGraph::for_each_handle_impl(const std::function< bool(const handle_t &)> &iteratee, bool parallel=false) const =0handlegraph::HandleGraphprotectedpure virtual
forward(const handle_t &handle) consthandlegraph::HandleGraph
frontiervg::IncrementalSubgraphprivate
frontier_copy_limitvg::IncrementalSubgraphprivate
frontier_countvg::IncrementalSubgraphprivate
frontier_indexvg::IncrementalSubgraphprivate
get_base(const handle_t &handle, size_t index) constvg::IncrementalSubgraphvirtual
get_degree(const handle_t &handle, bool go_left) constvg::IncrementalSubgraphvirtual
get_edge_count() constvg::IncrementalSubgraphvirtual
get_handle(const id_t &node_id, bool is_reverse=false) constvg::IncrementalSubgraphvirtual
get_id(const handle_t &handle) constvg::IncrementalSubgraphvirtual
get_is_reverse(const handle_t &handle) constvg::IncrementalSubgraphvirtual
get_length(const handle_t &handle) constvg::IncrementalSubgraphvirtual
get_node_count() constvg::IncrementalSubgraphvirtual
get_sequence(const handle_t &handle) constvg::IncrementalSubgraphvirtual
get_subsequence(const handle_t &handle, size_t index, size_t size) constvg::IncrementalSubgraphvirtual
get_total_length() consthandlegraph::HandleGraphvirtual
get_underlying_handle(const handle_t &handle) constvg::IncrementalSubgraphvirtual
graphvg::IncrementalSubgraphprivate
handle_at_order(size_t i) constvg::IncrementalSubgraph
has_edge(const handle_t &left, const handle_t &right) consthandlegraph::HandleGraphvirtual
has_edge(const edge_t &edge) consthandlegraph::HandleGraphinline
has_node(id_t node_id) constvg::IncrementalSubgraphvirtual
IncrementalSubgraph(const HandleGraph &graph, const pos_t &starting_position, bool extract_left, int64_t max_distance=numeric_limits< int64_t >::max(), size_t frontier_copy_limit=numeric_limits< size_t >::max(), size_t max_num_nodes=numeric_limits< size_t >::max())vg::IncrementalSubgraph
IncrementalSubgraph()=defaultvg::IncrementalSubgraph
is_extendable() constvg::IncrementalSubgraph
max_distancevg::IncrementalSubgraphprivate
max_distance_from_start(const handle_t &handle) constvg::IncrementalSubgraph
max_node_id() constvg::IncrementalSubgraphvirtual
max_num_nodesvg::IncrementalSubgraphprivate
min_distance_from_start(const handle_t &handle) constvg::IncrementalSubgraph
min_node_id() constvg::IncrementalSubgraphvirtual
order_of(const handle_t &handle) constvg::IncrementalSubgraph
traverse_edge_handle(const edge_t &edge, const handle_t &left) consthandlegraph::HandleGraph
underlying_interval(size_t i) constvg::IncrementalSubgraphprivate
~ExpandingOverlayGraph()=defaulthandlegraph::ExpandingOverlayGraphvirtual
~HandleGraph()=defaulthandlegraph::HandleGraphvirtual
~IncrementalSubgraph()vg::IncrementalSubgraph
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