vg
tools for working with variation graphs
vg
IndexRegistry
vg::IndexRegistry Member List
This is the complete list of members for
vg::IndexRegistry
, including all inherited members.
all_finished
(const vector< const IndexFile * > &inputs) const
vg::IndexRegistry
protected
all_finished
(const IndexGroup &inputs) const
vg::IndexRegistry
protected
available
(const IndexName &identifier) const
vg::IndexRegistry
completed_indexes
() const
vg::IndexRegistry
dependency_order
() const
vg::IndexRegistry
protected
execute_recipe
(const RecipeName &recipe_name, const IndexingPlan *plan, AliasGraph &alias_graph)
vg::IndexRegistry
protected
generalizations
vg::IndexRegistry
protected
get_index
(const IndexName &identifier)
vg::IndexRegistry
protected
get_index
(const IndexName &identifier) const
vg::IndexRegistry
protected
get_prefix
() const
vg::IndexRegistry
get_recipe
(const RecipeName &recipe_name) const
vg::IndexRegistry
protected
get_system_memory
()
vg::IndexRegistry
static
get_target_memory_usage
() const
vg::IndexRegistry
get_work_dir
()
vg::IndexRegistry
protected
gfa_has_haplotypes
(const string &filepath)
vg::IndexRegistry
static
index_registry
vg::IndexRegistry
protected
IndexingPlan
class
vg::IndexRegistry
friend
IndexRegistry
()=default
vg::IndexRegistry
IndexRegistry
(const IndexRegistry &other)=delete
vg::IndexRegistry
IndexRegistry
(IndexRegistry &&other)
vg::IndexRegistry
keep_intermediates
vg::IndexRegistry
protected
make_indexes
(const vector< IndexName > &identifiers)
vg::IndexRegistry
make_plan
(const IndexGroup &end_products) const
vg::IndexRegistry
protected
operator=
(const IndexRegistry &other)=delete
vg::IndexRegistry
operator=
(IndexRegistry &&other)
vg::IndexRegistry
output_prefix
vg::IndexRegistry
protected
provide
(const IndexName &identifier, const string &filename)
vg::IndexRegistry
provide
(const IndexName &identifier, const vector< string > &filenames)
vg::IndexRegistry
recipe_registry
vg::IndexRegistry
protected
register_generalization
(const RecipeName &generalizer, const RecipeName &generalizee)
vg::IndexRegistry
register_index
(const IndexName &identifier, const string &suffix)
vg::IndexRegistry
register_recipe
(const vector< IndexName > &identifiers, const vector< IndexName > &input_identifiers, const RecipeFunc &exec)
vg::IndexRegistry
registered_suffixes
vg::IndexRegistry
protected
require
(const IndexName &identifier) const
vg::IndexRegistry
reset
()
vg::IndexRegistry
set_intermediate_file_keeping
(bool keep_intermediates)
vg::IndexRegistry
set_prefix
(const string &prefix)
vg::IndexRegistry
set_target_memory_usage
(int64_t bytes)
vg::IndexRegistry
target_memory_usage
vg::IndexRegistry
protected
to_dot
() const
vg::IndexRegistry
to_dot
(const vector< IndexName > &targets) const
vg::IndexRegistry
vcf_is_phased
(const string &filepath)
vg::IndexRegistry
static
work_dir
vg::IndexRegistry
protected
~IndexRegistry
()
vg::IndexRegistry
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