vg
tools for working with variation graphs
vg::IndexRegistry Member List

This is the complete list of members for vg::IndexRegistry, including all inherited members.

all_finished(const vector< const IndexFile * > &inputs) constvg::IndexRegistryprotected
all_finished(const IndexGroup &inputs) constvg::IndexRegistryprotected
available(const IndexName &identifier) constvg::IndexRegistry
completed_indexes() constvg::IndexRegistry
dependency_order() constvg::IndexRegistryprotected
execute_recipe(const RecipeName &recipe_name, const IndexingPlan *plan, AliasGraph &alias_graph)vg::IndexRegistryprotected
generalizationsvg::IndexRegistryprotected
get_index(const IndexName &identifier)vg::IndexRegistryprotected
get_index(const IndexName &identifier) constvg::IndexRegistryprotected
get_prefix() constvg::IndexRegistry
get_recipe(const RecipeName &recipe_name) constvg::IndexRegistryprotected
get_system_memory()vg::IndexRegistrystatic
get_target_memory_usage() constvg::IndexRegistry
get_work_dir()vg::IndexRegistryprotected
gfa_has_haplotypes(const string &filepath)vg::IndexRegistrystatic
index_registryvg::IndexRegistryprotected
IndexingPlan classvg::IndexRegistryfriend
IndexRegistry()=defaultvg::IndexRegistry
IndexRegistry(const IndexRegistry &other)=deletevg::IndexRegistry
IndexRegistry(IndexRegistry &&other)vg::IndexRegistry
keep_intermediatesvg::IndexRegistryprotected
make_indexes(const vector< IndexName > &identifiers)vg::IndexRegistry
make_plan(const IndexGroup &end_products) constvg::IndexRegistryprotected
operator=(const IndexRegistry &other)=deletevg::IndexRegistry
operator=(IndexRegistry &&other)vg::IndexRegistry
output_prefixvg::IndexRegistryprotected
provide(const IndexName &identifier, const string &filename)vg::IndexRegistry
provide(const IndexName &identifier, const vector< string > &filenames)vg::IndexRegistry
recipe_registryvg::IndexRegistryprotected
register_generalization(const RecipeName &generalizer, const RecipeName &generalizee)vg::IndexRegistry
register_index(const IndexName &identifier, const string &suffix)vg::IndexRegistry
register_recipe(const vector< IndexName > &identifiers, const vector< IndexName > &input_identifiers, const RecipeFunc &exec)vg::IndexRegistry
registered_suffixesvg::IndexRegistryprotected
require(const IndexName &identifier) constvg::IndexRegistry
reset()vg::IndexRegistry
set_intermediate_file_keeping(bool keep_intermediates)vg::IndexRegistry
set_prefix(const string &prefix)vg::IndexRegistry
set_target_memory_usage(int64_t bytes)vg::IndexRegistry
target_memory_usagevg::IndexRegistryprotected
to_dot() constvg::IndexRegistry
to_dot(const vector< IndexName > &targets) constvg::IndexRegistry
vcf_is_phased(const string &filepath)vg::IndexRegistrystatic
work_dirvg::IndexRegistryprotected
~IndexRegistry()vg::IndexRegistry