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vg
tools for working with variation graphs
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This is the complete list of members for vg::IndexRegistry, including all inherited members.
| all_finished(const vector< const IndexFile * > &inputs) const | vg::IndexRegistry | protected |
| all_finished(const IndexGroup &inputs) const | vg::IndexRegistry | protected |
| available(const IndexName &identifier) const | vg::IndexRegistry | |
| check_files | vg::IndexRegistry | |
| completed_indexes() const | vg::IndexRegistry | |
| dependency_order() const | vg::IndexRegistry | protected |
| execute_recipe(const RecipeName &recipe_name, const IndexingPlan *plan, AliasGraph &alias_graph) | vg::IndexRegistry | protected |
| generalizations | vg::IndexRegistry | protected |
| get_index(const IndexName &identifier) | vg::IndexRegistry | protected |
| get_index(const IndexName &identifier) const | vg::IndexRegistry | protected |
| get_possible_filenames(const IndexName &identifier) const | vg::IndexRegistry | |
| get_prefix() const | vg::IndexRegistry | |
| get_recipe(const RecipeName &recipe_name) const | vg::IndexRegistry | protected |
| get_system_memory() | vg::IndexRegistry | static |
| get_target_memory_usage() const | vg::IndexRegistry | |
| get_wildcards(const string &pattern) | vg::IndexRegistry | static |
| get_work_dir() | vg::IndexRegistry | protected |
| gfa_has_haplotypes(const string &filepath) | vg::IndexRegistry | static |
| has_recipe(const RecipeName &recipe_name) const | vg::IndexRegistry | protected |
| index_registry | vg::IndexRegistry | protected |
| IndexingPlan class | vg::IndexRegistry | friend |
| IndexRegistry()=default | vg::IndexRegistry | |
| IndexRegistry(const IndexRegistry &other)=delete | vg::IndexRegistry | |
| IndexRegistry(IndexRegistry &&other) | vg::IndexRegistry | |
| keep_intermediates | vg::IndexRegistry | protected |
| make_indexes(const vector< IndexName > &identifiers) | vg::IndexRegistry | |
| make_plan(const IndexGroup &end_products) const | vg::IndexRegistry | protected |
| operator=(const IndexRegistry &other)=delete | vg::IndexRegistry | |
| operator=(IndexRegistry &&other) | vg::IndexRegistry | |
| output_prefix | vg::IndexRegistry | protected |
| provide(const IndexName &identifier, const string &filename, const map< string, string > &scopes={}) | vg::IndexRegistry | |
| provide(const IndexName &identifier, const vector< string > &filenames, const map< string, string > &scopes={}) | vg::IndexRegistry | |
| recipe_registry | vg::IndexRegistry | protected |
| register_generalization(const RecipeName &generalizer, const RecipeName &generalizee) | vg::IndexRegistry | |
| register_index(const IndexName &identifier, const string &suffix) | vg::IndexRegistry | |
| register_index(const IndexName &identifier, const vector< string > &suffixes) | vg::IndexRegistry | |
| register_recipe(const vector< IndexName > &identifiers, const vector< IndexName > &input_identifiers, const RecipeFunc &exec) | vg::IndexRegistry | |
| registered_suffixes | vg::IndexRegistry | protected |
| require(const IndexName &identifier) const | vg::IndexRegistry | |
| reset(const IndexName &identifier) | vg::IndexRegistry | |
| reset() | vg::IndexRegistry | |
| set_intermediate_file_keeping(bool keep_intermediates) | vg::IndexRegistry | |
| set_prefix(const string &prefix) | vg::IndexRegistry | |
| set_target_memory_usage(int64_t bytes) | vg::IndexRegistry | |
| substitute_wildcards(const string &pattern, const map< string, string > values) | vg::IndexRegistry | static |
| target_memory_usage | vg::IndexRegistry | protected |
| to_dot() const | vg::IndexRegistry | |
| to_dot(const vector< IndexName > &targets) const | vg::IndexRegistry | |
| vcf_is_phased(const string &filepath) | vg::IndexRegistry | static |
| work_dir | vg::IndexRegistry | protected |
| ~IndexRegistry() | vg::IndexRegistry |
1.9.1