vg
tools for working with variation graphs
vg::IndexedVG Member List

This is the complete list of members for vg::IndexedVG, including all inherited members.

cache_mutexvg::IndexedVGmutableprotected
cursor_poolvg::IndexedVGmutableprotected
cursor_pool_mutexvg::IndexedVGmutableprotected
cursor_streamsvg::IndexedVGmutableprotected
cursor_t typedefvg::IndexedVGprotected
edge_handle(const handle_t &left, const handle_t &right) consthandlegraph::HandleGraph
find(id_t id, const function< bool(const CacheEntry &)> &iteratee) constvg::IndexedVGprotected
flip(const handle_t &handle) constvg::IndexedVGvirtual
follow_edges(const handle_t &handle, bool go_left, const Iteratee &iteratee) consthandlegraph::HandleGraph
follow_edges_impl(const handle_t &handle, bool go_left, const function< bool(const handle_t &)> &iteratee) constvg::IndexedVGvirtual
handlegraph::HandleGraph::follow_edges_impl(const handle_t &handle, bool go_left, const std::function< bool(const handle_t &)> &iteratee) const =0handlegraph::HandleGraphprotectedpure virtual
for_each_edge(const Iteratee &iteratee, bool parallel=false) consthandlegraph::HandleGraph
for_each_handle(const Iteratee &iteratee, bool parallel=false) consthandlegraph::HandleGraph
for_each_handle_impl(const function< bool(const handle_t &)> &iteratee, bool parallel=false) constvg::IndexedVGvirtual
handlegraph::HandleGraph::for_each_handle_impl(const std::function< bool(const handle_t &)> &iteratee, bool parallel=false) const =0handlegraph::HandleGraphprotectedpure virtual
forward(const handle_t &handle) consthandlegraph::HandleGraph
get_base(const handle_t &handle, size_t index) consthandlegraph::HandleGraphvirtual
get_degree(const handle_t &handle, bool go_left) consthandlegraph::HandleGraphvirtual
get_edge_count() consthandlegraph::HandleGraphvirtual
get_handle(const id_t &node_id, bool is_reverse=false) constvg::IndexedVGvirtual
get_id(const handle_t &handle) constvg::IndexedVGvirtual
get_is_reverse(const handle_t &handle) constvg::IndexedVGvirtual
get_length(const handle_t &handle) constvg::IndexedVGvirtual
get_node_count() constvg::IndexedVGvirtual
get_sequence(const handle_t &handle) constvg::IndexedVGvirtual
get_subsequence(const handle_t &handle, size_t index, size_t size) consthandlegraph::HandleGraphvirtual
get_total_length() consthandlegraph::HandleGraphvirtual
group_cachevg::IndexedVGmutableprotected
has_edge(const handle_t &left, const handle_t &right) consthandlegraph::HandleGraphvirtual
has_edge(const edge_t &edge) consthandlegraph::HandleGraphinline
has_node(id_t node_id) constvg::IndexedVGvirtual
indexvg::IndexedVGprotected
IndexedVG(string graph_filename)vg::IndexedVG
IndexedVG(const IndexedVG &other)=deletevg::IndexedVGprivate
max_node_id() constvg::IndexedVGvirtual
min_node_id() constvg::IndexedVGvirtual
print_report() constvg::IndexedVG
traverse_edge_handle(const edge_t &edge, const handle_t &left) consthandlegraph::HandleGraph
vg_filenamevg::IndexedVGprotected
with_cache_entry(int64_t group_vo, const function< void(const CacheEntry &)> &callback) constvg::IndexedVGprotected
with_cursor(function< void(cursor_t &)> callback) constvg::IndexedVGprotected
~HandleGraph()=defaulthandlegraph::HandleGraphvirtual