vg
tools for working with variation graphs
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This is the complete list of members for vg::IndexedVG, including all inherited members.
cache_mutex | vg::IndexedVG | mutableprotected |
cursor_pool | vg::IndexedVG | mutableprotected |
cursor_pool_mutex | vg::IndexedVG | mutableprotected |
cursor_streams | vg::IndexedVG | mutableprotected |
cursor_t typedef | vg::IndexedVG | protected |
edge_handle(const handle_t &left, const handle_t &right) const | handlegraph::HandleGraph | |
find(id_t id, const function< bool(const CacheEntry &)> &iteratee) const | vg::IndexedVG | protected |
flip(const handle_t &handle) const | vg::IndexedVG | virtual |
follow_edges(const handle_t &handle, bool go_left, const Iteratee &iteratee) const | handlegraph::HandleGraph | |
follow_edges_impl(const handle_t &handle, bool go_left, const function< bool(const handle_t &)> &iteratee) const | vg::IndexedVG | virtual |
handlegraph::HandleGraph::follow_edges_impl(const handle_t &handle, bool go_left, const std::function< bool(const handle_t &)> &iteratee) const =0 | handlegraph::HandleGraph | protectedpure virtual |
for_each_edge(const Iteratee &iteratee, bool parallel=false) const | handlegraph::HandleGraph | |
for_each_handle(const Iteratee &iteratee, bool parallel=false) const | handlegraph::HandleGraph | |
for_each_handle_impl(const function< bool(const handle_t &)> &iteratee, bool parallel=false) const | vg::IndexedVG | virtual |
handlegraph::HandleGraph::for_each_handle_impl(const std::function< bool(const handle_t &)> &iteratee, bool parallel=false) const =0 | handlegraph::HandleGraph | protectedpure virtual |
forward(const handle_t &handle) const | handlegraph::HandleGraph | |
get_base(const handle_t &handle, size_t index) const | handlegraph::HandleGraph | virtual |
get_degree(const handle_t &handle, bool go_left) const | handlegraph::HandleGraph | virtual |
get_edge_count() const | handlegraph::HandleGraph | virtual |
get_handle(const id_t &node_id, bool is_reverse=false) const | vg::IndexedVG | virtual |
get_id(const handle_t &handle) const | vg::IndexedVG | virtual |
get_is_reverse(const handle_t &handle) const | vg::IndexedVG | virtual |
get_length(const handle_t &handle) const | vg::IndexedVG | virtual |
get_node_count() const | vg::IndexedVG | virtual |
get_sequence(const handle_t &handle) const | vg::IndexedVG | virtual |
get_subsequence(const handle_t &handle, size_t index, size_t size) const | handlegraph::HandleGraph | virtual |
get_total_length() const | handlegraph::HandleGraph | virtual |
group_cache | vg::IndexedVG | mutableprotected |
has_edge(const handle_t &left, const handle_t &right) const | handlegraph::HandleGraph | virtual |
has_edge(const edge_t &edge) const | handlegraph::HandleGraph | inline |
has_node(id_t node_id) const | vg::IndexedVG | virtual |
index | vg::IndexedVG | protected |
IndexedVG(string graph_filename) | vg::IndexedVG | |
IndexedVG(const IndexedVG &other)=delete | vg::IndexedVG | private |
max_node_id() const | vg::IndexedVG | virtual |
min_node_id() const | vg::IndexedVG | virtual |
print_report() const | vg::IndexedVG | |
traverse_edge_handle(const edge_t &edge, const handle_t &left) const | handlegraph::HandleGraph | |
vg_filename | vg::IndexedVG | protected |
with_cache_entry(int64_t group_vo, const function< void(const CacheEntry &)> &callback) const | vg::IndexedVG | protected |
with_cursor(function< void(cursor_t &)> callback) const | vg::IndexedVG | protected |
~HandleGraph()=default | handlegraph::HandleGraph | virtual |