vg
tools for working with variation graphs
vg::JoinedSpliceGraph Member List

This is the complete list of members for vg::JoinedSpliceGraph, including all inherited members.

edge_handle(const handle_t &left, const handle_t &right) consthandlegraph::HandleGraph
flip(const handle_t &handle) constvg::JoinedSpliceGraphvirtual
follow_edges(const handle_t &handle, bool go_left, const Iteratee &iteratee) consthandlegraph::HandleGraph
follow_edges_impl(const handle_t &handle, bool go_left, const function< bool(const handle_t &)> &iteratee) constvg::JoinedSpliceGraph
handlegraph::HandleGraph::follow_edges_impl(const handle_t &handle, bool go_left, const std::function< bool(const handle_t &)> &iteratee) const =0handlegraph::HandleGraphprotectedpure virtual
for_each_edge(const Iteratee &iteratee, bool parallel=false) consthandlegraph::HandleGraph
for_each_handle(const Iteratee &iteratee, bool parallel=false) consthandlegraph::HandleGraph
for_each_handle_impl(const function< bool(const handle_t &)> &iteratee, bool parallel=false) constvg::JoinedSpliceGraph
handlegraph::HandleGraph::for_each_handle_impl(const std::function< bool(const handle_t &)> &iteratee, bool parallel=false) const =0handlegraph::HandleGraphprotectedpure virtual
forward(const handle_t &handle) consthandlegraph::HandleGraph
get_base(const handle_t &handle, size_t index) constvg::JoinedSpliceGraphvirtual
get_degree(const handle_t &handle, bool go_left) consthandlegraph::HandleGraphvirtual
get_edge_count() consthandlegraph::HandleGraphvirtual
get_handle(const id_t &node_id, bool is_reverse=false) constvg::JoinedSpliceGraphvirtual
get_id(const handle_t &handle) constvg::JoinedSpliceGraphvirtual
get_is_reverse(const handle_t &handle) constvg::JoinedSpliceGraphvirtual
get_length(const handle_t &handle) constvg::JoinedSpliceGraphvirtual
get_node_count() constvg::JoinedSpliceGraphvirtual
get_sequence(const handle_t &handle) constvg::JoinedSpliceGraphvirtual
get_subsequence(const handle_t &handle, size_t index, size_t size) constvg::JoinedSpliceGraphvirtual
get_total_length() consthandlegraph::HandleGraphvirtual
handle_idxsvg::JoinedSpliceGraphprivate
has_edge(const handle_t &left, const handle_t &right) consthandlegraph::HandleGraphvirtual
has_edge(const edge_t &edge) consthandlegraph::HandleGraphinline
has_node(id_t node_id) constvg::JoinedSpliceGraphvirtual
JoinedSpliceGraph(const HandleGraph &parent_graph, const IncrementalSubgraph &left_subgraph, handle_t left_splice_node, size_t left_splice_offset, const IncrementalSubgraph &right_subgraph, handle_t right_splice_node, size_t right_splice_offset)vg::JoinedSpliceGraph
JoinedSpliceGraph()=defaultvg::JoinedSpliceGraph
left_handle_transvg::JoinedSpliceGraphprivate
left_seed_node() constvg::JoinedSpliceGraph
left_splice_node() constvg::JoinedSpliceGraph
left_splice_offsetvg::JoinedSpliceGraphprivate
left_subgraphvg::JoinedSpliceGraphprivate
max_link_length() constvg::JoinedSpliceGraph
max_node_id() constvg::JoinedSpliceGraphvirtual
min_link_length() constvg::JoinedSpliceGraph
min_node_id() constvg::JoinedSpliceGraphvirtual
num_left_handlesvg::JoinedSpliceGraphprivate
parent_graphvg::JoinedSpliceGraphprivate
right_handle_transvg::JoinedSpliceGraphprivate
right_seed_node() constvg::JoinedSpliceGraph
right_splice_node() constvg::JoinedSpliceGraph
right_splice_offsetvg::JoinedSpliceGraphprivate
right_subgraphvg::JoinedSpliceGraphprivate
translate_node_ids(Path &path) constvg::JoinedSpliceGraph
traverse_edge_handle(const edge_t &edge, const handle_t &left) consthandlegraph::HandleGraph
underlying_interval(const handle_t &handle) constvg::JoinedSpliceGraphprivate
~HandleGraph()=defaulthandlegraph::HandleGraphvirtual
~JoinedSpliceGraph()=defaultvg::JoinedSpliceGraph
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