vg::MCMCGenotyper Member List

This is the complete list of members for vg::MCMCGenotyper, including all inherited members.

alt_proposal_sample(vector< unordered_set< size_t >> &gamma, PhasedGenome &genome) const	vg::MCMCGenotyper
burn_in	vg::MCMCGenotyper	private
frequency	vg::MCMCGenotyper	private
generate_continuous_uniform(const double a, const double b) const	vg::MCMCGenotyper
generate_discrete_uniform(minstd_rand0 &random_engine, int lower_bound, int upper_bound) const	vg::MCMCGenotyper
generate_initial_guess() const	vg::MCMCGenotyper
graph	vg::MCMCGenotyper	private
karger_stein(const vector< multipath_alignment_t > &reads, PhasedGenome &genome) const	vg::MCMCGenotyper
log_target(unique_ptr< PhasedGenome > &phased_genome, const vector< multipath_alignment_t > &reads) const	vg::MCMCGenotyper
make_snarl_graph(unordered_map< pair< const Snarl *, const Snarl * >, int32_t > map) const	vg::MCMCGenotyper
make_snarl_map(const vector< multipath_alignment_t > &reads, PhasedGenome &phased_genome) const	vg::MCMCGenotyper
MCMCGenotyper(SnarlManager &snarls, VG &graph, const int n_iterations, const int seed, const int burn_in, const int frequency)	vg::MCMCGenotyper
n_iterations	vg::MCMCGenotyper	private
proposal_sample(unique_ptr< PhasedGenome > &current) const	vg::MCMCGenotyper
random_engine	vg::MCMCGenotyper	mutableprivate
run_genotype(const vector< multipath_alignment_t > &reads, const double log_base) const	vg::MCMCGenotyper
seed	vg::MCMCGenotyper	private
snarls	vg::MCMCGenotyper	private