vg
tools for working with variation graphs
vg::MEMChainModel Member List

This is the complete list of members for vg::MEMChainModel, including all inherited members.

clear_scores(void)vg::MEMChainModel
display(ostream &out)vg::MEMChainModel
display_dot(ostream &out, vector< MEMChainModelVertex * > vertex_trace)vg::MEMChainModel
max_vertex(void)vg::MEMChainModel
MEMChainModel(const vector< size_t > &aln_lengths, const vector< vector< MaximalExactMatch > > &matches, const function< int64_t(pos_t)> &approx_position, const function< unordered_map< path_handle_t, vector< pair< size_t, bool > > >(pos_t)> &path_position, const function< double(const MaximalExactMatch &, const MaximalExactMatch &)> &transition_weight, int band_width=10, int position_depth=1, int max_connections=20)vg::MEMChainModel
modelvg::MEMChainModel
positionsvg::MEMChainModel
redundant_vertexesvg::MEMChainModel
score(const unordered_set< MEMChainModelVertex * > &exclude)vg::MEMChainModel
traceback(int alt_alns, bool paired, bool debug)vg::MEMChainModel