This is the complete list of members for vg::MappingQualityCalculator, including all inherited members.

all_mapping_qualities_exact(const std::vector< double > &scaled_scores, const std::vector< double > *multiplicities=nullptr) const	vg::MappingQualityCalculator	private
compute_all_mapping_qualities(const std::vector< double > &scores, const std::vector< double > *multiplicities=nullptr) const	vg::MappingQualityCalculator
compute_first_mapping_quality(const std::vector< double > &scores, bool fast_approximation, const std::vector< double > *multiplicities=nullptr) const	vg::MappingQualityCalculator
compute_group_mapping_quality(const std::vector< double > &scores, const std::vector< size_t > &group, const std::vector< double > *multiplicities=nullptr) const	vg::MappingQualityCalculator
compute_mapping_quality(std::vector< Alignment > &alignments, int max_mapping_quality, bool fast_approximation, double cluster_mq, bool use_cluster_mq, int overlap_count, double mq_estimate, double maybe_mq_threshold, double identity_weight) const	vg::MappingQualityCalculator
compute_max_mapping_quality(const std::vector< double > &scores, bool fast_approximation, const std::vector< double > *multiplicities=nullptr) const	vg::MappingQualityCalculator
compute_paired_mapping_quality(std::pair< std::vector< Alignment >, std::vector< Alignment >> &alignment_pairs, const std::vector< double > &frag_weights, int max_mapping_quality1, int max_mapping_quality2, bool fast_approximation, double cluster_mq, bool use_cluster_mq, int overlap_count1, int overlap_count2, double mq_estimate1, double mq_estimate2, double maybe_mq_threshold, double identity_weight) const	vg::MappingQualityCalculator
estimate_max_possible_mapping_quality(int length, double min_diffs, double next_min_diffs) const	vg::MappingQualityCalculator
estimate_next_best_score(int length, double min_diffs) const	vg::MappingQualityCalculator
first_mapping_quality_approx(const std::vector< double > &scaled_scores, const std::vector< double > *multiplicities=nullptr)	vg::MappingQualityCalculator	static
first_mapping_quality_exact(const std::vector< double > &scaled_scores, const std::vector< double > *multiplicities=nullptr)	vg::MappingQualityCalculator	static
group_mapping_quality_exact(const std::vector< double > &scaled_scores, const std::vector< size_t > &group, const std::vector< double > *multiplicities=nullptr) const	vg::MappingQualityCalculator	private
log_base	vg::MappingQualityCalculator	private
mapping_quality_score_diff(double mapping_quality) const	vg::MappingQualityCalculator
MappingQualityCalculator(const ScorerT &scorer)	vg::MappingQualityCalculator	inline
max_possible_mapping_quality(int length) const	vg::MappingQualityCalculator
maximum_mapping_quality_approx(const std::vector< double > &scaled_scores, size_t max_idx_out, const std::vector< double > multiplicities=nullptr)	vg::MappingQualityCalculator	static
maximum_mapping_quality_exact(const std::vector< double > &scaled_scores, size_t max_idx_out, const std::vector< double > multiplicities=nullptr)	vg::MappingQualityCalculator	static
rep_match	vg::MappingQualityCalculator	private
rep_mismatch	vg::MappingQualityCalculator	private
score_to_unnormalized_likelihood_ln(double score) const	vg::MappingQualityCalculator