| apply_min_bp_edge_override(const vector< SnarlTraversal > &traversals, const set< int > &tgt_travs, vector< Support > &supports, int ref_trav_idx) const | vg::TraversalSupportFinder | virtual |
| average_node_support_switch_threshold | vg::TraversalSupportFinder | protected |
| average_traversal_support_switch_threshold | vg::TraversalSupportFinder | protected |
| avg_node_mapq_cache | vg::CachedPackedTraversalSupportFinder | mutableprotected |
| avg_node_support_cache | vg::CachedPackedTraversalSupportFinder | mutableprotected |
| CachedPackedTraversalSupportFinder(const Packer &packer, SnarlManager &snarl_manager, size_t cache_size=500000) | vg::CachedPackedTraversalSupportFinder | |
| child_support_map | vg::NestedCachedPackedTraversalSupportFinder | |
| edge_support_cache | vg::CachedPackedTraversalSupportFinder | mutableprotected |
| get_average_traversal_support_switch_threshold() const | vg::TraversalSupportFinder | virtual |
| get_avg_node_mapq(id_t node) const | vg::CachedPackedTraversalSupportFinder | virtual |
| get_avg_node_support(id_t node) const | vg::CachedPackedTraversalSupportFinder | virtual |
| get_child_support(const Snarl &snarl) const | vg::NestedCachedPackedTraversalSupportFinder | virtual |
| get_edge_length(const edge_t &edge, const unordered_map< id_t, size_t > &ref_offsets) const | vg::TraversalSupportFinder | virtual |
| get_edge_support(id_t from, bool from_reverse, id_t to, bool to_reverse) const | vg::CachedPackedTraversalSupportFinder | virtual |
| vg::PackedTraversalSupportFinder::get_edge_support(const edge_t &edge) const | vg::PackedTraversalSupportFinder | virtual |
| get_min_node_support(id_t node) const | vg::CachedPackedTraversalSupportFinder | virtual |
| get_ref_offsets(const SnarlTraversal &ref_trav) const | vg::TraversalSupportFinder | |
| get_traversal_genotype_support(const vector< SnarlTraversal > &traversals, const vector< int > &genotype, const set< int > &other_trav_subset, int ref_trav_idx=-1, int *max_trav_size=nullptr) | vg::TraversalSupportFinder | virtual |
| get_traversal_mapqs(const vector< SnarlTraversal > &traversals) const | vg::TraversalSupportFinder | virtual |
| get_traversal_set_support(const vector< SnarlTraversal > &traversals, const vector< int > &shared_travs, const vector< Support > &shared_support, const set< int > &tgt_travs, bool exclusive_only, const vector< int > &exclusive_count_travs, const vector< Support > &exclusive_count_support, int ref_trav_idx=-1, int *max_trav_size=nullptr) const | vg::TraversalSupportFinder | virtual |
| get_traversal_sizes(const vector< SnarlTraversal > &traversals) const | vg::TraversalSupportFinder | virtual |
| get_traversal_support(const SnarlTraversal &traversal) const | vg::TraversalSupportFinder | virtual |
| graph | vg::TraversalSupportFinder | protected |
| min_bp_edge_override | vg::TraversalSupportFinder | protected |
| min_node_support_cache | vg::CachedPackedTraversalSupportFinder | mutableprotected |
| NestedCachedPackedTraversalSupportFinder(const Packer &packer, SnarlManager &snarl_manager, size_t cache_size=500000) | vg::NestedCachedPackedTraversalSupportFinder | |
| PackedTraversalSupportFinder(const Packer &packer, SnarlManager &snarl_manager) | vg::PackedTraversalSupportFinder | |
| packer | vg::PackedTraversalSupportFinder | protected |
| set_min_bp_edge_override(bool bp_override) | vg::TraversalSupportFinder | virtual |
| set_support_switch_threshold(size_t trav_thresh, size_t node_thresh) | vg::TraversalSupportFinder | virtual |
| snarl_manager | vg::TraversalSupportFinder | protected |
| support_val(const Support &support) | vg::TraversalSupportFinder | inlinestatic |
| SupportMap typedef | vg::NestedCachedPackedTraversalSupportFinder | |
| TraversalSupportFinder(const HandleGraph &graph, SnarlManager &snarl_manager) | vg::TraversalSupportFinder | |
| ~CachedPackedTraversalSupportFinder() | vg::CachedPackedTraversalSupportFinder | virtual |
| ~NestedCachedPackedTraversalSupportFinder() | vg::NestedCachedPackedTraversalSupportFinder | virtual |
| ~PackedTraversalSupportFinder() | vg::PackedTraversalSupportFinder | virtual |
| ~TraversalSupportFinder() | vg::TraversalSupportFinder | virtual |
