vg::PhaseUnfolder Member List

This is the complete list of members for vg::PhaseUnfolder, including all inherited members.

border	vg::PhaseUnfolder	private
complement_components(MutableHandleGraph &graph, bool show_progress)	vg::PhaseUnfolder	private
create_state(vg::id_t node, bool is_reverse, bool starting)	vg::PhaseUnfolder	private
crossing_edges	vg::PhaseUnfolder	private
extend_path(const path_type &path)	vg::PhaseUnfolder	private
extend_state(state_type state, vg::id_t node, bool is_reverse)	vg::PhaseUnfolder	private
gbwt_index	vg::PhaseUnfolder	private
generate_paths(MutableHandleGraph &component, vg::id_t from)	vg::PhaseUnfolder	private
generate_threads(MutableHandleGraph &component, vg::id_t from)	vg::PhaseUnfolder	private
get_mapping(vg::id_t node) const	vg::PhaseUnfolder
get_prefix(gbwt::node_type from, gbwt::node_type node)	vg::PhaseUnfolder	private
get_suffix(gbwt::node_type node, gbwt::node_type to)	vg::PhaseUnfolder	private
insert_path(const path_type &path, bool from_border, bool to_border)	vg::PhaseUnfolder	private
make_edge(const HandleGraph &graph, gbwt::node_type from, gbwt::node_type to)	vg::PhaseUnfolder	inlinestatic
mapping	vg::PhaseUnfolder	private
path_graph	vg::PhaseUnfolder	private
path_type typedef	vg::PhaseUnfolder
PhaseUnfolder(const PathHandleGraph &path_graph, const gbwt::GBWT &gbwt_index, vg::id_t next_node)	vg::PhaseUnfolder
prefixes	vg::PhaseUnfolder	private
read_mapping(const std::string &filename)	vg::PhaseUnfolder
reference_paths	vg::PhaseUnfolder	private
restore_paths(MutableHandleGraph &graph, bool show_progress=false) const	vg::PhaseUnfolder
search_type typedef	vg::PhaseUnfolder
state_type typedef	vg::PhaseUnfolder
states	vg::PhaseUnfolder	private
suffixes	vg::PhaseUnfolder	private
unfold(MutableHandleGraph &graph, bool show_progress=false)	vg::PhaseUnfolder
unfold_component(MutableHandleGraph &component, MutableHandleGraph &graph, MutableHandleGraph &unfolded)	vg::PhaseUnfolder	private
verify_paths(MutableHandleGraph &unfolded, bool show_progress=false) const	vg::PhaseUnfolder
write_mapping(const std::string &filename) const	vg::PhaseUnfolder