vg::PhasedGenome Member List

This is the complete list of members for vg::PhasedGenome, including all inherited members.

add_haplotype(NodeTraversalIterator first, NodeTraversalIterator last)	vg::PhasedGenome
begin(int which_haplotype)	vg::PhasedGenome
build_indices()	vg::PhasedGenome
build_site_indices_internal(const Snarl *snarl)	vg::PhasedGenome	private
end(int which_haplotype)	vg::PhasedGenome
get_allele(const Snarl &site, int which_haplotype)	vg::PhasedGenome
get_haplotypes_with_snarl(const Snarl *snarl_to_find)	vg::PhasedGenome
haplotypes	vg::PhasedGenome	private
insert_left(NodeTraversal node_traversal, HaplotypeNode *haplo_node)	vg::PhasedGenome	inlineprivate
insert_right(NodeTraversal node_traversal, HaplotypeNode *haplo_node)	vg::PhasedGenome	inlineprivate
node_locations	vg::PhasedGenome	private
num_haplotypes()	vg::PhasedGenome
operator=(PhasedGenome &&phased_genome)=delete	vg::PhasedGenome
operator=(PhasedGenome &phased_genome)	vg::PhasedGenome
optimal_score_on_genome(const multipath_alignment_t &multipath_aln, VG &graph)	vg::PhasedGenome
PhasedGenome(const SnarlManager &snarl_manager)	vg::PhasedGenome
PhasedGenome(PhasedGenome &phased_genome)	vg::PhasedGenome
PhasedGenome(PhasedGenome &&other)=delete	vg::PhasedGenome
print_phased_genome()	vg::PhasedGenome
read_log_likelihood(const multipath_alignment_t &multipath_aln, double log_base)	vg::PhasedGenome
remove(HaplotypeNode *haplo_node)	vg::PhasedGenome	inlineprivate
set_allele(const Snarl &site, NodeTraversalIterator first, NodeTraversalIterator last, int which_haplotype)	vg::PhasedGenome
site_ends	vg::PhasedGenome	private
site_starts	vg::PhasedGenome	private
snarl_manager	vg::PhasedGenome	private
swap_alleles(const Snarl &site, int haplotype_1, int haplotype_2)	vg::PhasedGenome
swap_label(const Snarl &site, Haplotype &haplotype_1, Haplotype &haplotype_2)	vg::PhasedGenome	private
~PhasedGenome()	vg::PhasedGenome