This is the complete list of members for vg::ReadFilter< Read >, including all inherited members.

alignment_end_matches(const Alignment &aln) const	vg::ReadFilter< Read >	private
alignment_overhang(const Alignment &aln) const	vg::ReadFilter< Read >	private
aln_emitter	vg::ReadFilter< Read >	private
annotation_to_match	vg::ReadFilter< Read >
buffer_size	vg::ReadFilter< Read >
complement_filter	vg::ReadFilter< Read >
contains_subsequence(const Read &read) const	vg::ReadFilter< Read >	private
defray_count	vg::ReadFilter< Read >
defray_length	vg::ReadFilter< Read >
downsample_probability	vg::ReadFilter< Read >
downsample_seed_mask	vg::ReadFilter< Read >
drop_split	vg::ReadFilter< Read >
emit(Read &read)	vg::ReadFilter< Read >	private
emit(Read &read1, Read &read2)	vg::ReadFilter< Read >	private
emit(Alignment &aln)	vg::ReadFilter< Read >	inlineprivate
emit(Alignment &aln1, Alignment &aln2)	vg::ReadFilter< Read >	inlineprivate
emit(MultipathAlignment &mp_aln)	vg::ReadFilter< Read >	inlineprivate
emit(MultipathAlignment &mp_aln1, MultipathAlignment &mp_aln2)	vg::ReadFilter< Read >	inlineprivate
emit_tsv(Read &read)	vg::ReadFilter< Read >	private
emit_tsv(MultipathAlignment &read)	vg::ReadFilter< Read >	inlineprivate
emit_tsv(Alignment &read)	vg::ReadFilter< Read >	inlineprivate
exact_name	vg::ReadFilter< Read >
excluded_features	vg::ReadFilter< Read >
excluded_refpos_contigs	vg::ReadFilter< Read >
filter(istream *alignment_stream)	vg::ReadFilter< Read >
filter(istream *alignment_stream)	vg::ReadFilter< Read >	inline
filter(istream *alignment_stream)	vg::ReadFilter< Read >	inline
filter_alignment(Read &aln)	vg::ReadFilter< Read >
filter_internal(istream *in)	vg::ReadFilter< Read >	private
filter_on_all	vg::ReadFilter< Read >
frac_score	vg::ReadFilter< Read >
get_end_matches(const Read &read) const	vg::ReadFilter< Read >	private
get_end_matches(const MultipathAlignment &read) const	vg::ReadFilter< Read >	inlineprivate
get_end_matches(const Alignment &read) const	vg::ReadFilter< Read >	inlineprivate
get_is_paired(const Read &read) const	vg::ReadFilter< Read >	private
get_is_paired(const Alignment &aln) const	vg::ReadFilter< Read >	inlineprivate
get_is_paired(const MultipathAlignment &mp_aln) const	vg::ReadFilter< Read >	inlineprivate
get_mapq(const Read &read) const	vg::ReadFilter< Read >	private
get_min_base_qual_fraction(const Read &read) const	vg::ReadFilter< Read >	private
get_overhang(const Read &read) const	vg::ReadFilter< Read >	private
get_overhang(const Alignment &aln) const	vg::ReadFilter< Read >	inlineprivate
get_overhang(const MultipathAlignment &mp_aln) const	vg::ReadFilter< Read >	inlineprivate
get_score(const Read &read) const	vg::ReadFilter< Read >	private
get_score(const Alignment &aln) const	vg::ReadFilter< Read >	inlineprivate
get_score(const MultipathAlignment &read) const	vg::ReadFilter< Read >	inlineprivate
graph	vg::ReadFilter< Read >
has_excluded_refpos(const Read &read) const	vg::ReadFilter< Read >	private
has_excluded_refpos(const MultipathAlignment &read) const	vg::ReadFilter< Read >	inlineprivate
has_excluded_refpos(const Alignment &aln) const	vg::ReadFilter< Read >	inlineprivate
has_excuded_feature(const Read &read) const	vg::ReadFilter< Read >	private
has_repeat(const Read &read, int k) const	vg::ReadFilter< Read >	private
interleaved	vg::ReadFilter< Read >
is_correctly_mapped(const Read &read) const	vg::ReadFilter< Read >	private
is_correctly_mapped(const Alignment &alignment) const	vg::ReadFilter< Read >	inlineprivate
is_correctly_mapped(const MultipathAlignment &alignment) const	vg::ReadFilter< Read >	inlineprivate
is_mapped(const Read &read) const	vg::ReadFilter< Read >	private
is_mapped(const Alignment &alignment) const	vg::ReadFilter< Read >	private
is_mapped(const MultipathAlignment &mp_alignment) const	vg::ReadFilter< Read >	private
is_proper_pair(const Read &read) const	vg::ReadFilter< Read >	private
is_secondary(const Read &read) const	vg::ReadFilter< Read >	private
is_secondary(const MultipathAlignment &mp_aln) const	vg::ReadFilter< Read >	inlineprivate
is_secondary(const Alignment &aln) const	vg::ReadFilter< Read >	inlineprivate
is_split(const Read &read) const	vg::ReadFilter< Read >	private
is_split(const Alignment &alignment) const	vg::ReadFilter< Read >	inlineprivate
is_split(const MultipathAlignment &mp_aln) const	vg::ReadFilter< Read >	inlineprivate
matches_annotation(const Read &read) const	vg::ReadFilter< Read >	private
matches_name(const Read &read) const	vg::ReadFilter< Read >	private
max_overhang	vg::ReadFilter< Read >
min_base_quality	vg::ReadFilter< Read >
min_base_quality_fraction	vg::ReadFilter< Read >
min_end_matches	vg::ReadFilter< Read >
min_mapq	vg::ReadFilter< Read >
min_primary	vg::ReadFilter< Read >
min_secondary	vg::ReadFilter< Read >
mp_aln_emitter	vg::ReadFilter< Read >	private
name_prefixes	vg::ReadFilter< Read >
only_correctly_mapped	vg::ReadFilter< Read >
only_mapped	vg::ReadFilter< Read >
only_proper_pairs	vg::ReadFilter< Read >
output_fields	vg::ReadFilter< Read >
repeat_size	vg::ReadFilter< Read >
rescore	vg::ReadFilter< Read >
sample_read(const Read &read) const	vg::ReadFilter< Read >	private
sub_score	vg::ReadFilter< Read >
subsequences	vg::ReadFilter< Read >
threads	vg::ReadFilter< Read >
to_alignment(const MultipathAlignment &multipath_aln) const	vg::ReadFilter< Read >	private
trim_ambiguous_end(Alignment &alignment, int k) const	vg::ReadFilter< Read >	private
trim_ambiguous_ends(Read &read, int k) const	vg::ReadFilter< Read >
trim_ambiguous_ends(Alignment &alignment, int k) const	vg::ReadFilter< Read >	inline
trim_ambiguous_ends(MultipathAlignment &aln, int k) const	vg::ReadFilter< Read >	inline
verbose	vg::ReadFilter< Read >
write_output	vg::ReadFilter< Read >
write_tsv	vg::ReadFilter< Read >