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vg
tools for working with variation graphs
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This is the complete list of members for vg::SSWAligner, including all inherited members.
| align(const string &query, const string &ref) | vg::SSWAligner | |
| gap_extension | vg::SSWAligner | |
| gap_open | vg::SSWAligner | |
| match | vg::SSWAligner | |
| mismatch | vg::SSWAligner | |
| PrintAlignment(const StripedSmithWaterman::Alignment &alignment) | vg::SSWAligner | |
| ssw_to_vg(const StripedSmithWaterman::Alignment &ssw_aln, const string &query, const string &ref) | vg::SSWAligner | |
| SSWAligner(uint8_t _match=1, uint8_t _mismatch=4, uint8_t _gap_open=6, uint8_t _gap_extension=1) | vg::SSWAligner | inline |
| ~SSWAligner(void) | vg::SSWAligner | inline |
1.8.17