vg
tools for working with variation graphs
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This is the complete list of members for vg::SnarlGraph, including all inherited members.
backing_graph | vg::SnarlGraph | protected |
edge_handle(const handle_t &left, const handle_t &right) const | handlegraph::HandleGraph | |
edge_to_snarl_edge(edge_t edge) const | vg::SnarlGraph | |
embed_ref_path_snarls(SnarlTraversal &traversal) | vg::SnarlGraph | |
embed_snarl(Visit &visit) | vg::SnarlGraph | |
embed_snarls(SnarlTraversal &traversal) | vg::SnarlGraph | |
flip(const handle_t &handle) const | vg::SnarlGraph | virtual |
follow_edges(const handle_t &handle, bool go_left, const Iteratee &iteratee) const | handlegraph::HandleGraph | |
follow_edges_impl(const handle_t &handle, bool go_left, const std::function< bool(const handle_t &)> &iteratee) const | vg::SnarlGraph | protectedvirtual |
for_each_edge(const Iteratee &iteratee, bool parallel=false) const | handlegraph::HandleGraph | |
for_each_handle(const Iteratee &iteratee, bool parallel=false) const | handlegraph::HandleGraph | |
for_each_handle_impl(const std::function< bool(const handle_t &)> &iteratee, bool parallel=false) const | vg::SnarlGraph | protectedvirtual |
forward(const handle_t &handle) const | handlegraph::HandleGraph | |
get_base(const handle_t &handle, size_t index) const | handlegraph::HandleGraph | virtual |
get_degree(const handle_t &handle, bool go_left) const | handlegraph::HandleGraph | virtual |
get_edge_count() const | handlegraph::HandleGraph | virtual |
get_handle(const nid_t &node_id, bool is_reverse=false) const | vg::SnarlGraph | virtual |
get_id(const handle_t &handle) const | vg::SnarlGraph | virtual |
get_is_reverse(const handle_t &handle) const | vg::SnarlGraph | virtual |
get_length(const handle_t &handle) const | vg::SnarlGraph | virtual |
get_node_count() const | vg::SnarlGraph | virtual |
get_sequence(const handle_t &handle) const | vg::SnarlGraph | virtual |
get_subsequence(const handle_t &handle, size_t index, size_t size) const | handlegraph::HandleGraph | virtual |
get_total_length() const | handlegraph::HandleGraph | virtual |
has_edge(const handle_t &left, const handle_t &right) const | handlegraph::HandleGraph | virtual |
has_edge(const edge_t &edge) const | handlegraph::HandleGraph | inline |
has_node(nid_t node_id) const | vg::SnarlGraph | virtual |
max_node_id() const | vg::SnarlGraph | virtual |
min_node_id() const | vg::SnarlGraph | virtual |
node_to_snarl(handle_t handle) const | vg::SnarlGraph | |
snarl_manager | vg::SnarlGraph | protected |
SnarlGraph(const HandleGraph *backing_graph, SnarlManager &snarl_manager, vector< const Snarl * > snarls) | vg::SnarlGraph | |
snarls | vg::SnarlGraph | protected |
traverse_edge_handle(const edge_t &edge, const handle_t &left) const | handlegraph::HandleGraph | |
~HandleGraph()=default | handlegraph::HandleGraph | virtual |