vg
tools for working with variation graphs
vg::SnarlGraph Member List

This is the complete list of members for vg::SnarlGraph, including all inherited members.

backing_graphvg::SnarlGraphprotected
edge_handle(const handle_t &left, const handle_t &right) consthandlegraph::HandleGraph
edge_to_snarl_edge(edge_t edge) constvg::SnarlGraph
embed_ref_path_snarls(SnarlTraversal &traversal)vg::SnarlGraph
embed_snarl(Visit &visit)vg::SnarlGraph
embed_snarls(SnarlTraversal &traversal)vg::SnarlGraph
flip(const handle_t &handle) constvg::SnarlGraphvirtual
follow_edges(const handle_t &handle, bool go_left, const Iteratee &iteratee) consthandlegraph::HandleGraph
follow_edges_impl(const handle_t &handle, bool go_left, const std::function< bool(const handle_t &)> &iteratee) constvg::SnarlGraphprotectedvirtual
for_each_edge(const Iteratee &iteratee, bool parallel=false) consthandlegraph::HandleGraph
for_each_handle(const Iteratee &iteratee, bool parallel=false) consthandlegraph::HandleGraph
for_each_handle_impl(const std::function< bool(const handle_t &)> &iteratee, bool parallel=false) constvg::SnarlGraphprotectedvirtual
forward(const handle_t &handle) consthandlegraph::HandleGraph
get_base(const handle_t &handle, size_t index) consthandlegraph::HandleGraphvirtual
get_degree(const handle_t &handle, bool go_left) consthandlegraph::HandleGraphvirtual
get_edge_count() consthandlegraph::HandleGraphvirtual
get_handle(const nid_t &node_id, bool is_reverse=false) constvg::SnarlGraphvirtual
get_id(const handle_t &handle) constvg::SnarlGraphvirtual
get_is_reverse(const handle_t &handle) constvg::SnarlGraphvirtual
get_length(const handle_t &handle) constvg::SnarlGraphvirtual
get_node_count() constvg::SnarlGraphvirtual
get_sequence(const handle_t &handle) constvg::SnarlGraphvirtual
get_subsequence(const handle_t &handle, size_t index, size_t size) consthandlegraph::HandleGraphvirtual
get_total_length() consthandlegraph::HandleGraphvirtual
has_edge(const handle_t &left, const handle_t &right) consthandlegraph::HandleGraphvirtual
has_edge(const edge_t &edge) consthandlegraph::HandleGraphinline
has_node(nid_t node_id) constvg::SnarlGraphvirtual
max_node_id() constvg::SnarlGraphvirtual
min_node_id() constvg::SnarlGraphvirtual
node_to_snarl(handle_t handle) constvg::SnarlGraph
snarl_managervg::SnarlGraphprotected
SnarlGraph(const HandleGraph *backing_graph, SnarlManager &snarl_manager, vector< const Snarl * > snarls)vg::SnarlGraph
snarlsvg::SnarlGraphprotected
traverse_edge_handle(const edge_t &edge, const handle_t &left) consthandlegraph::HandleGraph
~HandleGraph()=defaulthandlegraph::HandleGraphvirtual