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vg
tools for working with variation graphs
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This is the complete list of members for vg::SnarlManagerDecomposition, including all inherited members.
| canonical(const net_handle_t &net) const override | vg::SnarlManagerDecomposition | virtual |
| chain_net(const Chain &chain) const | vg::SnarlManagerDecomposition | private |
| chain_node_net(const Chain &chain, size_t position, bool is_reverse) const | vg::SnarlManagerDecomposition | private |
| chain_of_net(const net_handle_t &net) const | vg::SnarlManagerDecomposition | private |
| directory | vg::SnarlManagerDecomposition | private |
| END enum value | handlegraph::SnarlDecomposition | |
| endpoint_t enum name | handlegraph::SnarlDecomposition | |
| ends_at(const net_handle_t &traversal) const override | vg::SnarlManagerDecomposition | virtual |
| ends_at_end(const net_handle_t &net) const | handlegraph::SnarlDecomposition | inline |
| ends_at_start(const net_handle_t &net) const | handlegraph::SnarlDecomposition | inline |
| ends_at_tip(const net_handle_t &net) const | handlegraph::SnarlDecomposition | inline |
| flip(const net_handle_t &net) const override | vg::SnarlManagerDecomposition | virtual |
| follow_net_edges(const net_handle_t &here, const HandleGraph *graph, bool go_left, const Iteratee &iteratee) const | handlegraph::SnarlDecomposition | |
| follow_net_edges_impl(const net_handle_t &here, const HandleGraph *handle_graph, bool go_left, const std::function< bool(const net_handle_t &)> &iteratee) const override | vg::SnarlManagerDecomposition | protectedvirtual |
| follow_right(const HandleGraph &graph, const net_handle_t &here, const std::function< bool(const net_handle_t &)> &iteratee) const | vg::SnarlManagerDecomposition | private |
| for_each_chain_child(const net_handle_t &traversal, const std::function< bool(const net_handle_t &)> &iteratee) const | vg::SnarlManagerDecomposition | private |
| for_each_child(const net_handle_t &parent, const Iteratee &iteratee) const | handlegraph::SnarlDecomposition | |
| for_each_child_impl(const net_handle_t &traversal, const std::function< bool(const net_handle_t &)> &iteratee) const override | vg::SnarlManagerDecomposition | protectedvirtual |
| for_each_sibling_ahead(const HandleGraph &graph, const net_handle_t &here, const std::function< bool(const net_handle_t &)> &iteratee) const | vg::SnarlManagerDecomposition | private |
| for_each_snarl_child(const Snarl *parent, const std::function< bool(const net_handle_t &)> &iteratee) const | vg::SnarlManagerDecomposition | private |
| for_each_tippy_child(const net_handle_t &parent, const Iteratee &iteratee) const | handlegraph::SnarlDecomposition | |
| for_each_tippy_child_impl(const net_handle_t &parent, const std::function< bool(const net_handle_t &)> &iteratee) const | handlegraph::SnarlDecomposition | protectedvirtual |
| for_each_traversal(const net_handle_t &item, const Iteratee &iteratee) const | handlegraph::SnarlDecomposition | |
| for_each_traversal_end(const net_handle_t &traversal, const Iteratee &) const | handlegraph::SnarlDecomposition | |
| for_each_traversal_end_impl(const net_handle_t &traversal, const std::function< bool(const net_handle_t &)> &iteratee) const | handlegraph::SnarlDecomposition | protectedvirtual |
| for_each_traversal_from(const net_handle_t &element, endpoint_t start, const std::function< bool(const net_handle_t &)> &iteratee) const | vg::SnarlManagerDecomposition | private |
| for_each_traversal_impl(const net_handle_t &item, const std::function< bool(const net_handle_t &)> &iteratee) const override | vg::SnarlManagerDecomposition | protectedvirtual |
| for_each_traversal_start(const net_handle_t &traversal, const Iteratee &) const | handlegraph::SnarlDecomposition | |
| for_each_traversal_start_impl(const net_handle_t &traversal, const std::function< bool(const net_handle_t &)> &iteratee) const | handlegraph::SnarlDecomposition | protectedvirtual |
| get_bound(const net_handle_t &snarl, bool get_end, bool face_in) const override | vg::SnarlManagerDecomposition | virtual |
| get_end_bound(const net_handle_t &parent) const | handlegraph::SnarlDecomposition | inline |
| get_handle(const net_handle_t &net, const HandleGraph *handle_graph) const override | vg::SnarlManagerDecomposition | virtual |
| get_net(const handle_t &handle, const HandleGraph *handle_graph) const override | vg::SnarlManagerDecomposition | virtual |
| get_parent(const net_handle_t &child) const override | vg::SnarlManagerDecomposition | virtual |
| get_parent_traversal(const net_handle_t &traversal_start, const net_handle_t &traversal_end) const override | vg::SnarlManagerDecomposition | virtual |
| get_root() const override | vg::SnarlManagerDecomposition | virtual |
| get_snarl(const net_handle_t &net) const | vg::SnarlManagerDecomposition | |
| get_snarl_net(const Snarl *snarl) const | vg::SnarlManagerDecomposition | |
| get_start_bound(const net_handle_t &parent) const | handlegraph::SnarlDecomposition | inline |
| is_chain(const net_handle_t &net) const override | vg::SnarlManagerDecomposition | virtual |
| is_node(const net_handle_t &net) const override | vg::SnarlManagerDecomposition | virtual |
| is_root(const net_handle_t &net) const override | vg::SnarlManagerDecomposition | virtual |
| is_sentinel(const net_handle_t &net) const override | vg::SnarlManagerDecomposition | virtual |
| is_snarl(const net_handle_t &net) const override | vg::SnarlManagerDecomposition | virtual |
| manager | vg::SnarlManagerDecomposition | private |
| next_in_chain(const net_handle_t &here) const | vg::SnarlManagerDecomposition | private |
| parent_endpoint(const net_handle_t &net, bool is_start) const | vg::SnarlManagerDecomposition | private |
| sibling_entered_by(const HandleGraph &graph, const handle_t &handle, const Snarl *parent) const | vg::SnarlManagerDecomposition | private |
| snarl_bound(const Snarl *snarl, bool get_end) const | vg::SnarlManagerDecomposition | private |
| snarl_net(const Snarl *snarl, bool forward) const | vg::SnarlManagerDecomposition | private |
| snarl_of_number(uint64_t number) const | vg::SnarlManagerDecomposition | private |
| SnarlManagerDecomposition(const SnarlManager &manager, const HandleGraph &graph) | vg::SnarlManagerDecomposition | |
| START enum value | handlegraph::SnarlDecomposition | |
| starts_at(const net_handle_t &traversal) const override | vg::SnarlManagerDecomposition | virtual |
| starts_at_end(const net_handle_t &net) const | handlegraph::SnarlDecomposition | inline |
| starts_at_start(const net_handle_t &net) const | handlegraph::SnarlDecomposition | inline |
| starts_at_tip(const net_handle_t &net) const | handlegraph::SnarlDecomposition | inline |
| survey | vg::SnarlManagerDecomposition | private |
| TIP enum value | handlegraph::SnarlDecomposition | |
| traversals_of(const net_handle_t &item) const | vg::SnarlManagerDecomposition | private |
| ~SnarlDecomposition()=default | handlegraph::SnarlDecomposition | virtual |
| ~SnarlManagerDecomposition() override=default | vg::SnarlManagerDecomposition |
1.9.1