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vg
tools for working with variation graphs
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This is the complete list of members for vg::SourceSinkOverlay, including all inherited members.
| backing | vg::SourceSinkOverlay | protected |
| backing_heads | vg::SourceSinkOverlay | protected |
| backing_tails | vg::SourceSinkOverlay | protected |
| edge_handle(const handle_t &left, const handle_t &right) const | handlegraph::HandleGraph | |
| flip(const handle_t &handle) const | vg::SourceSinkOverlay | virtual |
| follow_edges(const handle_t &handle, bool go_left, const Iteratee &iteratee) const | handlegraph::HandleGraph | |
| follow_edges_impl(const handle_t &handle, bool go_left, const function< bool(const handle_t &)> &iteratee) const | vg::SourceSinkOverlay | virtual |
| handlegraph::ExpandingOverlayGraph::follow_edges_impl(const handle_t &handle, bool go_left, const std::function< bool(const handle_t &)> &iteratee) const =0 | handlegraph::HandleGraph | protectedpure virtual |
| for_each_edge(const Iteratee &iteratee, bool parallel=false) const | handlegraph::HandleGraph | |
| for_each_handle(const Iteratee &iteratee, bool parallel=false) const | handlegraph::HandleGraph | |
| for_each_handle_impl(const function< bool(const handle_t &)> &iteratee, bool parallel=false) const | vg::SourceSinkOverlay | virtual |
| handlegraph::ExpandingOverlayGraph::for_each_handle_impl(const std::function< bool(const handle_t &)> &iteratee, bool parallel=false) const =0 | handlegraph::HandleGraph | protectedpure virtual |
| forward(const handle_t &handle) const | handlegraph::HandleGraph | |
| from_backing(const handle_t &backing_handle) const | vg::SourceSinkOverlay | inlineprotected |
| get_base(const handle_t &handle, size_t index) const | handlegraph::HandleGraph | virtual |
| get_degree(const handle_t &handle, bool go_left) const | vg::SourceSinkOverlay | virtual |
| get_edge_count() const | handlegraph::HandleGraph | virtual |
| get_handle(const id_t &node_id, bool is_reverse) const | vg::SourceSinkOverlay | virtual |
| get_id(const handle_t &handle) const | vg::SourceSinkOverlay | virtual |
| get_is_reverse(const handle_t &handle) const | vg::SourceSinkOverlay | virtual |
| get_length(const handle_t &handle) const | vg::SourceSinkOverlay | virtual |
| get_node_count() const | vg::SourceSinkOverlay | virtual |
| get_sequence(const handle_t &handle) const | vg::SourceSinkOverlay | virtual |
| get_sink_handle() const | vg::SourceSinkOverlay | |
| get_source_handle() const | vg::SourceSinkOverlay | |
| get_subsequence(const handle_t &handle, size_t index, size_t size) const | handlegraph::HandleGraph | virtual |
| get_total_length() const | handlegraph::HandleGraph | virtual |
| get_underlying_handle(const handle_t &handle) const | vg::SourceSinkOverlay | virtual |
| has_edge(const handle_t &left, const handle_t &right) const | handlegraph::HandleGraph | virtual |
| has_edge(const edge_t &edge) const | handlegraph::HandleGraph | inline |
| has_node(id_t node_id) const | vg::SourceSinkOverlay | virtual |
| is_ours(const handle_t &our_handle) const | vg::SourceSinkOverlay | inlineprotected |
| max_node_id() const | vg::SourceSinkOverlay | virtual |
| min_node_id() const | vg::SourceSinkOverlay | virtual |
| node_length | vg::SourceSinkOverlay | protected |
| sink_fwd | vg::SourceSinkOverlay | protected |
| sink_id | vg::SourceSinkOverlay | protected |
| sink_rev | vg::SourceSinkOverlay | protected |
| source_fwd | vg::SourceSinkOverlay | protected |
| source_id | vg::SourceSinkOverlay | protected |
| source_rev | vg::SourceSinkOverlay | protected |
| SourceSinkOverlay(const HandleGraph *backing, size_t length=1024, id_t source_id=0, id_t sink_id=0, bool break_disconnected=true) | vg::SourceSinkOverlay | |
| to_backing(const handle_t &our_handle) const | vg::SourceSinkOverlay | inlineprotected |
| traverse_edge_handle(const edge_t &edge, const handle_t &left) const | handlegraph::HandleGraph | |
| ~ExpandingOverlayGraph()=default | handlegraph::ExpandingOverlayGraph | virtual |
| ~HandleGraph()=default | handlegraph::HandleGraph | virtual |
1.8.17