vg
tools for working with variation graphs
vg::SurjectingAlignmentEmitter Member List

This is the complete list of members for vg::SurjectingAlignmentEmitter, including all inherited members.

backingvg::SurjectingAlignmentEmitterprotected
emit_extra_message(const std::string &tag, std::string &&data)vg::io::AlignmentEmittervirtual
emit_mapped_pair(vector< Alignment > &&alns1, vector< Alignment > &&alns2, int64_t tlen_limit=0)vg::io::AlignmentEmittervirtual
emit_mapped_pairs(vector< vector< Alignment >> &&alns1_batch, vector< vector< Alignment >> &&alns2_batch, vector< int64_t > &&tlen_limit_batch)vg::SurjectingAlignmentEmittervirtual
emit_mapped_single(vector< Alignment > &&alns)vg::io::AlignmentEmittervirtual
emit_mapped_singles(vector< vector< Alignment >> &&alns_batch)vg::SurjectingAlignmentEmittervirtual
emit_pair(Alignment &&aln1, Alignment &&aln2, int64_t tlen_limit=0)vg::io::AlignmentEmittervirtual
emit_pairs(vector< Alignment > &&aln1_batch, vector< Alignment > &&aln2_batch, vector< int64_t > &&tlen_limit_batch)vg::SurjectingAlignmentEmittervirtual
emit_single(Alignment &&aln)vg::io::AlignmentEmittervirtual
emit_singles(vector< Alignment > &&aln_batch)vg::SurjectingAlignmentEmittervirtual
pathsvg::SurjectingAlignmentEmitterprotected
surject_alignments_in_place(vector< Alignment > &alns) constvg::SurjectingAlignmentEmitterprotected
surject_subpath_globalvg::SurjectingAlignmentEmitter
SurjectingAlignmentEmitter(const PathPositionHandleGraph *graph, unordered_set< path_handle_t > paths, unique_ptr< AlignmentEmitter > &&backing, bool prune_suspicious_anchors=false)vg::SurjectingAlignmentEmitter
surjectorvg::SurjectingAlignmentEmitterprotected
~AlignmentEmitter()=defaultvg::io::AlignmentEmittervirtual