vg
tools for working with variation graphs
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This is the complete list of members for vg::TraversalSupportFinder, including all inherited members.
apply_min_bp_edge_override(const vector< SnarlTraversal > &traversals, const set< int > &tgt_travs, vector< Support > &supports, int ref_trav_idx) const | vg::TraversalSupportFinder | virtual |
average_node_support_switch_threshold | vg::TraversalSupportFinder | protected |
average_traversal_support_switch_threshold | vg::TraversalSupportFinder | protected |
get_average_traversal_support_switch_threshold() const | vg::TraversalSupportFinder | virtual |
get_avg_node_mapq(id_t node) const =0 | vg::TraversalSupportFinder | pure virtual |
get_avg_node_support(id_t node) const =0 | vg::TraversalSupportFinder | pure virtual |
get_child_support(const Snarl &snarl) const | vg::TraversalSupportFinder | virtual |
get_edge_length(const edge_t &edge, const unordered_map< id_t, size_t > &ref_offsets) const | vg::TraversalSupportFinder | virtual |
get_edge_support(const edge_t &edge) const =0 | vg::TraversalSupportFinder | pure virtual |
get_edge_support(id_t from, bool from_reverse, id_t to, bool to_reverse) const =0 | vg::TraversalSupportFinder | pure virtual |
get_min_node_support(id_t node) const =0 | vg::TraversalSupportFinder | pure virtual |
get_ref_offsets(const SnarlTraversal &ref_trav) const | vg::TraversalSupportFinder | |
get_traversal_genotype_support(const vector< SnarlTraversal > &traversals, const vector< int > &genotype, const set< int > &other_trav_subset, int ref_trav_idx=-1, int *max_trav_size=nullptr) | vg::TraversalSupportFinder | virtual |
get_traversal_mapqs(const vector< SnarlTraversal > &traversals) const | vg::TraversalSupportFinder | virtual |
get_traversal_set_support(const vector< SnarlTraversal > &traversals, const vector< int > &shared_travs, const vector< Support > &shared_support, const set< int > &tgt_travs, bool exclusive_only, const vector< int > &exclusive_count_travs, const vector< Support > &exclusive_count_support, int ref_trav_idx=-1, int *max_trav_size=nullptr) const | vg::TraversalSupportFinder | virtual |
get_traversal_sizes(const vector< SnarlTraversal > &traversals) const | vg::TraversalSupportFinder | virtual |
get_traversal_support(const SnarlTraversal &traversal) const | vg::TraversalSupportFinder | virtual |
graph | vg::TraversalSupportFinder | protected |
min_bp_edge_override | vg::TraversalSupportFinder | protected |
set_min_bp_edge_override(bool bp_override) | vg::TraversalSupportFinder | virtual |
set_support_switch_threshold(size_t trav_thresh, size_t node_thresh) | vg::TraversalSupportFinder | virtual |
snarl_manager | vg::TraversalSupportFinder | protected |
support_val(const Support &support) | vg::TraversalSupportFinder | inlinestatic |
TraversalSupportFinder(const HandleGraph &graph, SnarlManager &snarl_manager) | vg::TraversalSupportFinder | |
~TraversalSupportFinder() | vg::TraversalSupportFinder | virtual |