vg
tools for working with variation graphs
vg::TreeSubgraph Member List

This is the complete list of members for vg::TreeSubgraph, including all inherited members.

childrenvg::TreeSubgraphprotected
edge_handle(const handle_t &left, const handle_t &right) consthandlegraph::HandleGraph
flip(const handle_t &handle) constvg::TreeSubgraphvirtual
follow_edges(const handle_t &handle, bool go_left, const Iteratee &iteratee) consthandlegraph::HandleGraph
follow_edges_impl(const handle_t &handle, bool go_left, const function< bool(const handle_t &)> &iteratee) constvg::TreeSubgraphprotectedvirtual
handlegraph::ExpandingOverlayGraph::follow_edges_impl(const handle_t &handle, bool go_left, const std::function< bool(const handle_t &)> &iteratee) const =0handlegraph::HandleGraphprotectedpure virtual
for_each_edge(const Iteratee &iteratee, bool parallel=false) consthandlegraph::HandleGraph
for_each_handle(const Iteratee &iteratee, bool parallel=false) consthandlegraph::HandleGraph
for_each_handle_impl(const function< bool(const handle_t &)> &iteratee, bool parallel=false) constvg::TreeSubgraphprotectedvirtual
handlegraph::ExpandingOverlayGraph::for_each_handle_impl(const std::function< bool(const handle_t &)> &iteratee, bool parallel=false) const =0handlegraph::HandleGraphprotectedpure virtual
forward(const handle_t &handle) consthandlegraph::HandleGraph
get_base(const handle_t &handle, size_t index) consthandlegraph::HandleGraphvirtual
get_degree(const handle_t &handle, bool go_left) consthandlegraph::HandleGraphvirtual
get_edge_count() consthandlegraph::HandleGraphvirtual
get_handle(const id_t &node_id, bool is_reverse=false) constvg::TreeSubgraphvirtual
get_id(const handle_t &handle) constvg::TreeSubgraphvirtual
get_is_reverse(const handle_t &handle) constvg::TreeSubgraphvirtual
get_length(const handle_t &handle) constvg::TreeSubgraphvirtual
get_node_count() constvg::TreeSubgraphvirtual
get_root() constvg::TreeSubgraph
get_sequence(const handle_t &handle) constvg::TreeSubgraphvirtual
get_subsequence(const handle_t &handle, size_t index, size_t size) consthandlegraph::HandleGraphvirtual
get_topological_order() constvg::TreeSubgraph
get_total_length() consthandlegraph::HandleGraphvirtual
get_underlying_handle(const handle_t &handle) constvg::TreeSubgraphvirtual
has_edge(const handle_t &left, const handle_t &right) consthandlegraph::HandleGraphvirtual
has_edge(const edge_t &edge) consthandlegraph::HandleGraphinline
has_node(id_t node_id) constvg::TreeSubgraphvirtual
max_node_id() constvg::TreeSubgraphvirtual
min_node_id() constvg::TreeSubgraphvirtual
root_trimvg::TreeSubgraphprotected
supervg::TreeSubgraphprotected
translate_down(const Path &path_against_subgraph) constvg::TreeSubgraph
traverse_edge_handle(const edge_t &edge, const handle_t &left) consthandlegraph::HandleGraph
treevg::TreeSubgraphprotected
TreeSubgraph(const HandleGraph *super, vector< pair< int64_t, handle_t >> &&tree, size_t root_trim=0)vg::TreeSubgraph
~ExpandingOverlayGraph()=defaulthandlegraph::ExpandingOverlayGraphvirtual
~HandleGraph()=defaulthandlegraph::HandleGraphvirtual