This is the complete list of members for vg::VariantAdder, including all inherited members.
| add_name_mapping(const string &vcf_name, const string &fasta_name) | vg::NameMapper | |
| add_variants(vcflib::VariantCallFile *vcf) | vg::VariantAdder | |
| align_ns(vg::VG &graph, Alignment &aln) | vg::VariantAdder | |
| aligner | vg::VariantAdder | |
| create_progress(const string &message, long count) | vg::Progressive | |
| create_progress(long count) | vg::Progressive | |
| destroy_progress(void) | vg::Progressive | |
| doubling_steps | vg::VariantAdder | |
| edge_max | vg::VariantAdder | |
| ensure_progress(long count) | vg::Progressive | |
| fasta_to_vcf(const string &fasta_name) const | vg::NameMapper | |
| fasta_to_vcf_renames | vg::NameMapper | protected |
| filter_local_variants(const vector< vcflib::Variant * > &before, vcflib::Variant *variant, const vector< vcflib::Variant * > &after) const | vg::VariantAdder | protected |
| flank_range | vg::VariantAdder | |
| get_center(const vcflib::Variant &variant) | vg::VariantAdder | protectedstatic |
| get_center_and_radius(const vector< vcflib::Variant * > &variants) | vg::VariantAdder | protectedstatic |
| get_graph() const | vg::VariantAdder | |
| get_radius(const vcflib::Variant &variant) | vg::VariantAdder | protectedstatic |
| get_unique_haplotypes(const vector< vcflib::Variant * > &variants, WindowedVcfBuffer *cache=nullptr) const | vg::VariantAdder | protected |
| graph | vg::VariantAdder | protected |
| haplotype_to_string(const vector< int > &haplotype, const vector< vcflib::Variant * > &variants) | vg::VariantAdder | protected |
| ignore_missing_contigs | vg::VariantAdder | |
| increment_progress() | vg::Progressive | |
| kmer_size | vg::VariantAdder | |
| large_alignment_band_padding | vg::VariantAdder | |
| last_progress | vg::Progressive | private |
| mapper_alignment_cutoff | vg::VariantAdder | |
| max_context_radius | vg::VariantAdder | |
| max_node_size | vg::VariantAdder | |
| min_score_factor | vg::VariantAdder | |
| path_names | vg::VariantAdder | protected |
| pinned_tail_size | vg::VariantAdder | |
| preload_progress(const string &message) | vg::Progressive | |
| print_updates | vg::VariantAdder | |
| progress | vg::Progressive | private |
| progress_count | vg::Progressive | private |
| progress_message | vg::Progressive | private |
| progress_seen | vg::Progressive | private |
| show_progress | vg::Progressive | |
| skip_structural_duplications | vg::VariantAdder | |
| smart_align(vg::VG &graph, pair< NodeSide, NodeSide > endpoints, const string &to_align, size_t max_span) | vg::VariantAdder | |
| subgraph_prune | vg::VariantAdder | |
| sync | vg::VariantAdder | protected |
| thin_alignment_cutoff | vg::VariantAdder | |
| update_progress(long i) | vg::Progressive | |
| variant_range | vg::VariantAdder | |
| VariantAdder(VG &graph) | vg::VariantAdder | |
| vcf_to_fasta(const string &vcf_name) const | vg::NameMapper | |
| vcf_to_fasta_renames | vg::NameMapper | protected |
| whole_alignment_cutoff | vg::VariantAdder | |
| with_progress(bool show_progress, const std::string &task, const std::function< void(const std::function< void(size_t, size_t)> &progress)> &callback) | vg::Progressive | static |
