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vg
tools for working with variation graphs
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This is the complete list of members for vg::WFATree, including all inherited members.
| adjust_diagonal_range(std::pair< std::int32_t, std::int32_t > &range, std::int32_t diagonal) | vg::WFATree | inlineprivatestatic |
| at_dead_end(const MatchPos &pos) const | vg::WFATree | inlineprivate |
| candidate_node | vg::WFATree | |
| candidate_point | vg::WFATree | |
| del_predecessor(uint32_t node, int32_t score, int32_t diagonal) const | vg::WFATree | inline |
| empty_diagonal_range() | vg::WFATree | inlineprivatestatic |
| expand_if_necessary(const MatchPos &pos) | vg::WFATree | inlineprivate |
| extend(std::int32_t score) | vg::WFATree | inline |
| extend_over(std::int32_t score, std::int32_t diagonal, const std::vector< std::uint32_t > &leaves) | vg::WFATree | inlineprivate |
| find_pos(size_t type, uint32_t node, int32_t score, int32_t diagonal, bool extendable_seq, bool extendable_graph) const | vg::WFATree | inlineprivate |
| from | vg::WFATree | |
| gap_extend | vg::WFATree | |
| gap_extend_penalty(std::uint32_t length) const | vg::WFATree | inline |
| gap_open | vg::WFATree | |
| gap_penalty(std::uint32_t length) const | vg::WFATree | inline |
| get_diagonals(int32_t score) | vg::WFATree | inlineprivate |
| get_leaves() const | vg::WFATree | inlineprivate |
| graph | vg::WFATree | |
| ins_predecessor(uint32_t node, int32_t score, int32_t diagonal) const | vg::WFATree | inline |
| is_root(std::uint32_t node) | vg::WFATree | inlinestatic |
| match_predecessor(uint32_t node, int32_t score, int32_t diagonal) const | vg::WFATree | inline |
| max_distance | vg::WFATree | |
| min_distance | vg::WFATree | |
| mismatch | vg::WFATree | |
| next(std::int32_t score) | vg::WFATree | inline |
| next_score(std::int32_t match_score) | vg::WFATree | inline |
| no_pos(pos_t pos) | vg::WFATree | inlinestatic |
| nodes | vg::WFATree | |
| parent(std::uint32_t node) const | vg::WFATree | inline |
| possible_scores | vg::WFATree | |
| predecessor_offset(uint32_t &node, uint32_t &offset) const | vg::WFATree | inline |
| score_bound | vg::WFATree | |
| sequence | vg::WFATree | |
| size() const | vg::WFATree | inline |
| successor_offset(MatchPos &pos) const | vg::WFATree | inline |
| to | vg::WFATree | |
| trim(const Aligner &aligner) | vg::WFATree | inline |
| update_diagonal_range(std::pair< std::int32_t, std::int32_t > range, std::int32_t score) const | vg::WFATree | inlineprivate |
| WFATree(const gbwtgraph::GBWTGraph &graph, const std::string &sequence, pos_t from, pos_t to, const Aligner &aligner, const WFAExtender::ErrorModel &error_model) | vg::WFATree | inline |
1.8.17