vg
tools for working with variation graphs
vg::ZipCodeTree Member List

This is the complete list of members for vg::ZipCodeTree, including all inherited members.

add_close_bound(size_t start_index)vg::ZipCodeTree
begin() constvg::ZipCodeTreeinline
CHAIN_COUNT enum valuevg::ZipCodeTree
CHAIN_END enum valuevg::ZipCodeTree
CHAIN_START enum valuevg::ZipCodeTree
dag_and_cyclic_snarl_count() constvg::ZipCodeTree
EDGE enum valuevg::ZipCodeTree
end() constvg::ZipCodeTreeinline
find_distances(const seed_iterator &from, size_t distance_limit=std::numeric_limits< size_t >::max()) constvg::ZipCodeTree
get_all_seeds() constvg::ZipCodeTreeinline
get_item_at_index(size_t index) constvg::ZipCodeTreeinline
get_offset_to_seed(size_t &i, bool right_to_left) constvg::ZipCodeTree
get_tree_size() constvg::ZipCodeTreeinline
node_is_invalid(nid_t id, const SnarlDistanceIndex &distance_index, size_t distance_limit=std::numeric_limits< size_t >::max()) constvg::ZipCodeTree
print_self(const vector< Seed > *seeds) constvg::ZipCodeTree
Seed typedefvg::ZipCodeTreeprivate
SEED enum valuevg::ZipCodeTree
seed_is_reversed_at_depth(const Seed &seed, size_t depth, const SnarlDistanceIndex &distance_index)vg::ZipCodeTreeprotectedstatic
SNARL_END enum valuevg::ZipCodeTree
SNARL_START enum valuevg::ZipCodeTree
tree_item_type_t enum namevg::ZipCodeTree
validate_boundaries(const SnarlDistanceIndex &distance_index, const vector< Seed > *seeds, size_t distance_limit=std::numeric_limits< size_t >::max()) constvg::ZipCodeTree
validate_chain(std::vector< tree_item_t >::const_iterator &zip_iterator, const SnarlDistanceIndex &distance_index, const vector< Seed > *seeds, size_t distance_limit=std::numeric_limits< size_t >::max()) constvg::ZipCodeTree
validate_seed_distances(const SnarlDistanceIndex &distance_index, const vector< Seed > *seeds, size_t distance_limit=std::numeric_limits< size_t >::max()) constvg::ZipCodeTree
validate_snarl(std::vector< tree_item_t >::const_iterator &zip_iterator, const SnarlDistanceIndex &distance_index, const vector< Seed > *seeds, size_t distance_limit=std::numeric_limits< size_t >::max()) constvg::ZipCodeTree
validate_zip_tree(const SnarlDistanceIndex &distance_index, const vector< Seed > *seeds, size_t distance_limit=std::numeric_limits< size_t >::max()) constvg::ZipCodeTree
validate_zip_tree_order(const SnarlDistanceIndex &distance_index, const vector< Seed > *seeds) constvg::ZipCodeTree
zip_code_treevg::ZipCodeTreeprotected
ZipCodeForest classvg::ZipCodeTreefriend
ZipCodeTree()vg::ZipCodeTreeinline