vg
tools for working with variation graphs
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This is the complete list of members for vg::ZipCodeTree, including all inherited members.
add_close_bound(size_t start_index) | vg::ZipCodeTree | |
begin() const | vg::ZipCodeTree | inline |
CHAIN_COUNT enum value | vg::ZipCodeTree | |
CHAIN_END enum value | vg::ZipCodeTree | |
CHAIN_START enum value | vg::ZipCodeTree | |
dag_and_cyclic_snarl_count() const | vg::ZipCodeTree | |
EDGE enum value | vg::ZipCodeTree | |
end() const | vg::ZipCodeTree | inline |
find_distances(const seed_iterator &from, size_t distance_limit=std::numeric_limits< size_t >::max()) const | vg::ZipCodeTree | |
get_all_seeds() const | vg::ZipCodeTree | inline |
get_item_at_index(size_t index) const | vg::ZipCodeTree | inline |
get_offset_to_seed(size_t &i, bool right_to_left) const | vg::ZipCodeTree | |
get_tree_size() const | vg::ZipCodeTree | inline |
node_is_invalid(nid_t id, const SnarlDistanceIndex &distance_index, size_t distance_limit=std::numeric_limits< size_t >::max()) const | vg::ZipCodeTree | |
print_self(const vector< Seed > *seeds) const | vg::ZipCodeTree | |
Seed typedef | vg::ZipCodeTree | private |
SEED enum value | vg::ZipCodeTree | |
seed_is_reversed_at_depth(const Seed &seed, size_t depth, const SnarlDistanceIndex &distance_index) | vg::ZipCodeTree | protectedstatic |
SNARL_END enum value | vg::ZipCodeTree | |
SNARL_START enum value | vg::ZipCodeTree | |
tree_item_type_t enum name | vg::ZipCodeTree | |
validate_boundaries(const SnarlDistanceIndex &distance_index, const vector< Seed > *seeds, size_t distance_limit=std::numeric_limits< size_t >::max()) const | vg::ZipCodeTree | |
validate_chain(std::vector< tree_item_t >::const_iterator &zip_iterator, const SnarlDistanceIndex &distance_index, const vector< Seed > *seeds, size_t distance_limit=std::numeric_limits< size_t >::max()) const | vg::ZipCodeTree | |
validate_seed_distances(const SnarlDistanceIndex &distance_index, const vector< Seed > *seeds, size_t distance_limit=std::numeric_limits< size_t >::max()) const | vg::ZipCodeTree | |
validate_snarl(std::vector< tree_item_t >::const_iterator &zip_iterator, const SnarlDistanceIndex &distance_index, const vector< Seed > *seeds, size_t distance_limit=std::numeric_limits< size_t >::max()) const | vg::ZipCodeTree | |
validate_zip_tree(const SnarlDistanceIndex &distance_index, const vector< Seed > *seeds, size_t distance_limit=std::numeric_limits< size_t >::max()) const | vg::ZipCodeTree | |
validate_zip_tree_order(const SnarlDistanceIndex &distance_index, const vector< Seed > *seeds) const | vg::ZipCodeTree | |
zip_code_tree | vg::ZipCodeTree | protected |
ZipCodeForest class | vg::ZipCodeTree | friend |
ZipCodeTree() | vg::ZipCodeTree | inline |