vg
tools for working with variation graphs
vg::ZipCodeTree Member List

This is the complete list of members for vg::ZipCodeTree, including all inherited members.

begin() constvg::ZipCodeTree
CHAIN_END enum valuevg::ZipCodeTree
CHAIN_START enum valuevg::ZipCodeTree
dag_and_non_dag_snarl_count(const vector< Seed > &seeds, const SnarlDistanceIndex &distance_index) constvg::ZipCodeTree
EDGE enum valuevg::ZipCodeTree
end() constvg::ZipCodeTree
get_item_at_index(size_t index) constvg::ZipCodeTreeinline
get_tree_size() constvg::ZipCodeTreeinline
look_back(const iterator &from, size_t distance_limit=std::numeric_limits< size_t >::max()) constvg::ZipCodeTree
NODE_COUNT enum valuevg::ZipCodeTree
node_is_in_cyclic_snarl(nid_t id, const SnarlDistanceIndex &distance_index) constvg::ZipCodeTree
node_is_invalid(nid_t id, const SnarlDistanceIndex &distance_index, size_t distance_limit=std::numeric_limits< size_t >::max()) constvg::ZipCodeTree
print_self(const vector< Seed > *seeds, const VectorView< Minimizer > *minimizers) constvg::ZipCodeTree
rend() constvg::ZipCodeTree
Seed typedefvg::ZipCodeTreeprivate
SEED enum valuevg::ZipCodeTree
seed_is_reversed_at_depth(const Seed &seed, size_t depth, const SnarlDistanceIndex &distance_index)vg::ZipCodeTreeprotectedstatic
SNARL_END enum valuevg::ZipCodeTree
SNARL_START enum valuevg::ZipCodeTree
tree_item_type_t enum namevg::ZipCodeTree
validate_snarl(std::vector< tree_item_t >::const_iterator zip_iterator, const SnarlDistanceIndex &distance_index, const vector< Seed > *seeds, size_t distance_limit=std::numeric_limits< size_t >::max()) constvg::ZipCodeTree
validate_zip_tree(const SnarlDistanceIndex &distance_index, const vector< Seed > *seeds, size_t distance_limit=std::numeric_limits< size_t >::max()) constvg::ZipCodeTree
zip_code_treevg::ZipCodeTreeprotected
ZipCodeForest classvg::ZipCodeTreefriend
ZipCodeTree()vg::ZipCodeTreeinline