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vg
tools for working with variation graphs
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This is the complete list of members for vg::algorithms::GFAzParser, including all inherited members.
| as_chars(const string &value) | vg::algorithms::GFAParser | inlinestatic |
| assign_new_sequence_id(const string &str, GFAIDMapInfo &id_map_info) | vg::algorithms::GFAParser | protectedstatic |
| chars_t typedef | vg::algorithms::GFAParser | |
| cursor_t typedef | vg::algorithms::GFAParser | |
| decode_rgfa_tags(const tag_list_t &tags, string *out_name=nullptr, int64_t *out_offset=nullptr, int64_t *out_rank=nullptr) | vg::algorithms::GFAParser | protectedstatic |
| edge_listeners | vg::algorithms::GFAParser | |
| empty(const chars_t &range) | vg::algorithms::GFAParser | inlinestatic |
| external_id_map | vg::algorithms::GFAParser | |
| extract(const chars_t &range) | vg::algorithms::GFAParser | inlinestatic |
| find_existing_sequence_id(std::string_view str, const GFAIDMapInfo &id_map_info) | vg::algorithms::GFAParser | protectedstatic |
| finish_decode() | vg::algorithms::GFAzParser | private |
| handle_duplicate_paths(char line_type, const function< void(void)> &callback) | vg::algorithms::GFAzParser | private |
| has_magic(const char *buffer, size_t length) | vg::algorithms::GFAzParser | static |
| header_listeners | vg::algorithms::GFAParser | |
| id_map() | vg::algorithms::GFAParser | |
| id_map() const | vg::algorithms::GFAParser | |
| internal_id_map | vg::algorithms::GFAParser | |
| length(const chars_t &range) | vg::algorithms::GFAParser | inlinestatic |
| looks_like_gfaz(const string &filename) | vg::algorithms::GFAzParser | static |
| make_visit_source(const vector< gfaz::NodeId > &visits) | vg::algorithms::GFAzParser | privatestatic |
| max_rgfa_rank | vg::algorithms::GFAParser | |
| node_listeners | vg::algorithms::GFAParser | |
| on_header(const string &header_line) override | vg::algorithms::GFAzParser | private |
| on_link(uint32_t from_id, bool from_is_reverse, uint32_t to_id, bool to_is_reverse, const string &overlap, const gfaz::GfaTagList &tags) override | vg::algorithms::GFAzParser | private |
| on_path(const string &name, const vector< gfaz::NodeId > &visits, const string &overlap, const gfaz::GfaTagList &tags) override | vg::algorithms::GFAzParser | private |
| on_segment(uint32_t id, const string &sequence, const gfaz::GfaTagList &tags) override | vg::algorithms::GFAzParser | private |
| on_walk(const string &sample_name, uint32_t haplotype, const string &contig_name, int64_t sequence_start, int64_t sequence_end, const vector< gfaz::NodeId > &visits) override | vg::algorithms::GFAzParser | private |
| parse(istream &in) override | vg::algorithms::GFAzParser | virtual |
| parse(const string &filename) override | vg::algorithms::GFAzParser | virtual |
| parse_h(const string &h_line) | vg::algorithms::GFAParser | protectedstatic |
| parse_l(const string &l_line) | vg::algorithms::GFAParser | protectedstatic |
| parse_p(const string &p_line) | vg::algorithms::GFAParser | protectedstatic |
| parse_s(const string &s_line) | vg::algorithms::GFAParser | protectedstatic |
| parse_tags(const chars_t &tag_range) | vg::algorithms::GFAParser | protectedstatic |
| parse_w(const string &p_line) | vg::algorithms::GFAParser | protectedstatic |
| path_listeners | vg::algorithms::GFAParser | |
| pending_rgfa_visits | vg::algorithms::GFAzParser | private |
| prepare_decode() | vg::algorithms::GFAzParser | private |
| rgfa_listeners | vg::algorithms::GFAParser | |
| rgfa_path_ranks | vg::algorithms::GFAzParser | private |
| scan_p_visits(const chars_t &visit_range, function< bool(int64_t rank, const chars_t &node_name, bool is_reverse)> visit_step) | vg::algorithms::GFAParser | protectedstatic |
| scan_visits(const chars_t &visit_range, char line_type, function< bool(int64_t rank, const chars_t &node_name, bool is_reverse)> visit_step) | vg::algorithms::GFAParser | protectedstatic |
| scan_w_visits(const chars_t &visit_range, function< bool(int64_t rank, const chars_t &node_name, bool is_reverse)> visit_step) | vg::algorithms::GFAParser | protectedstatic |
| stop_on_duplicate_paths | vg::algorithms::GFAParser | |
| tag_list_t typedef | vg::algorithms::GFAParser | |
| text_visit_iteratee_t typedef | vg::algorithms::GFAParser | protected |
| text_visit_source_t typedef | vg::algorithms::GFAParser | protected |
| visit_iteratee_t typedef | vg::algorithms::GFAParser | |
| visit_source_t typedef | vg::algorithms::GFAParser | |
| walk_listeners | vg::algorithms::GFAParser | |
| wrap(const visit_iteratee_t &iteratee) const | vg::algorithms::GFAParser | protected |
| wrap(const text_visit_source_t &source) const | vg::algorithms::GFAParser | protected |
| ~GFAParser()=default | vg::algorithms::GFAParser | virtual |
1.9.1