vg
tools for working with variation graphs
vg::io::GafAlignmentEmitter Member List

This is the complete list of members for vg::io::GafAlignmentEmitter, including all inherited members.

emit_extra_message(const std::string &tag, std::string &&data)vg::io::AlignmentEmittervirtual
emit_mapped_pair(vector< Alignment > &&alns1, vector< Alignment > &&alns2, int64_t tlen_limit=0)vg::io::AlignmentEmittervirtual
emit_mapped_pairs(vector< vector< Alignment >> &&alns1_batch, vector< vector< Alignment >> &&alns2_batch, vector< int64_t > &&tlen_limit_batch)vg::io::GafAlignmentEmittervirtual
emit_mapped_single(vector< Alignment > &&alns)vg::io::AlignmentEmittervirtual
emit_mapped_singles(vector< vector< Alignment >> &&alns_batch)vg::io::GafAlignmentEmittervirtual
emit_pair(Alignment &&aln1, Alignment &&aln2, int64_t tlen_limit=0)vg::io::AlignmentEmittervirtual
emit_pairs(vector< Alignment > &&aln1_batch, vector< Alignment > &&aln2_batch, vector< int64_t > &&tlen_limit_batch)vg::io::GafAlignmentEmittervirtual
emit_single(Alignment &&aln)vg::io::AlignmentEmittervirtual
emit_singles(vector< Alignment > &&aln_batch)vg::io::GafAlignmentEmittervirtual
GafAlignmentEmitter(const string &filename, const string &format, const HandleGraph &_graph, size_t max_threads, const handlegraph::NamedNodeBackTranslation *translate_through=nullptr)vg::io::GafAlignmentEmitter
graphvg::io::GafAlignmentEmitterprivate
multiplexervg::io::GafAlignmentEmitterprivate
out_filevg::io::GafAlignmentEmitterprivate
translate_throughvg::io::GafAlignmentEmitterprivate
~AlignmentEmitter()=defaultvg::io::AlignmentEmittervirtual
~GafAlignmentEmitter()vg::io::GafAlignmentEmitter
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