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| gbwtgraph::GFAParsingParameters | vg::get_best_gbwtgraph_gfa_parsing_parameters () |
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| void | vg::load_gbwtgraph (gbwtgraph::GBWTGraph &graph, const std::string &filename, bool show_progress) |
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| void | vg::load_gbz (gbwtgraph::GBZ &gbz, const std::string &filename, bool show_progress=false) |
| | Load GBZ from the file. More...
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| void | vg::load_gbz (gbwt::GBWT &index, gbwtgraph::GBWTGraph &graph, const std::string &filename, bool show_progress=false) |
| | Load GBWT and GBWTGraph from the GBZ file. More...
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| void | vg::load_gbz (gbwtgraph::GBZ &gbz, const std::string &gbwt_name, const std::string &graph_name, bool show_progress=false) |
| | Load GBZ from separate GBWT / GBWTGraph files. More...
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| void | vg::load_minimizer (gbwtgraph::DefaultMinimizerIndex &index, const std::string &filename, bool show_progress=false) |
| | Load a minimizer index from the file. More...
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| void | vg::save_gbwtgraph (const gbwtgraph::GBWTGraph &graph, const std::string &filename, bool show_progress=false) |
| | Save GBWTGraph to the file. More...
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| void | vg::save_gbz (const gbwtgraph::GBZ &gbz, const std::string &filename, bool show_progress=false) |
| | Save GBZ to the file. More...
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| void | vg::save_gbz (const gbwt::GBWT &index, gbwtgraph::GBWTGraph &graph, const std::string &filename, bool show_progress=false) |
| | Save GBWT and GBWTGraph to the GBZ file. More...
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| void | vg::save_gbz (const gbwtgraph::GBZ &gbz, const std::string &gbwt_name, const std::string &graph_name, bool show_progress=false) |
| | Save GBZ to separate GBWT / GBWTGraph files. More...
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| void | vg::save_minimizer (const gbwtgraph::DefaultMinimizerIndex &index, const std::string &filename, bool show_progress=false) |
| | Save a minimizer index to the file. More...
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| unordered_map< string, vector< nid_t > > | vg::load_translation_map (const gbwtgraph::GBWTGraph &graph) |
| | Return a mapping of the original segment ids to a list of chopped node ids. More...
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| unordered_map< nid_t, pair< string, size_t > > | vg::load_translation_back_map (const gbwtgraph::GBWTGraph &graph) |
| | Return a backwards mapping of chopped node to original segment position (id,offset pair) More...
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| std::string | vg::to_string_gbwtgraph (handle_t handle) |
| | Returns a string representation of a GBWTGraph handle. More...
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| std::string | vg::to_string_gbwtgraph (gbwt::node_type node) |
| | Returns a string representation of a GBWTGraph node. More...
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