gfa.hpp File Reference

#include "handle.hpp"

Namespaces
	vg

Functions
void	vg::graph_to_gfa (const PathHandleGraph *graph, ostream &out, const set< string > &rgfa_paths, bool rgfa_pline, bool use_w_lines)

Detailed Description

Defines GFA I/O algorithms for PathHandleGraphs graphs.

Includes an algorithm for converting from GFA, including non-perfect-match edge overlaps and edges that specify containment of one node in another, to a blunt-ended VG.