haplotype_indexer.hpp File Reference

#include <string>
#include <utility>
#include <map>
#include <memory>
#include <unordered_set>
#include <vector>
#include <gbwt/gbwt.h>
#include <gbwt/dynamic_gbwt.h>
#include <gbwt/variants.h>
#include <gbwtgraph/gbwtgraph.h>
#include <gbwtgraph/minimizer.h>
#include "handle.hpp"
#include "progressive.hpp"

Classes
class	vg::HaplotypeIndexer

Namespaces
	vg

Detailed Description

: defines how to construct GBWT indexes and VCF parses.