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| bool | vg::kff_is_trivial (const uint8_t *encoding) |
| | Returns true if the encoding is trivial (0, 1, 2, 3). More...
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| std::string | vg::kff_invert (const uint8_t *encoding) |
| | Inverts the KFF encoding into a packed -> char table. More...
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| kff_recoding_t | vg::kff_recoding (const uint8_t *encoding) |
| | Returns a recoding for the given encoding. More...
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| uint64_t | vg::kff_parse (const uint8_t *data, size_t bytes) |
| | Parses a big-endian integer from KFF data. More...
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| uint8_t | vg::kff_encode (const std::string &kmer, size_t start, size_t limit, const uint8_t *encoding) |
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| std::vector< uint8_t > | vg::kff_encode (const std::string &kmer, const uint8_t *encoding) |
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| void | vg::kff_decode (uint8_t byte, size_t chars, const std::string &decoding, std::string &output) |
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| std::string | vg::kff_decode (const uint8_t *kmer, size_t k, const std::string &decoding) |
| | Decodes a kmer in KFF format according to the given encoding. More...
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| uint8_t | vg::kff_recode (gbwtgraph::Key64::value_type kmer, size_t k, size_t chars, const uint8_t *encoding) |
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| std::vector< uint8_t > | vg::kff_recode (gbwtgraph::Key64::value_type kmer, size_t k, const uint8_t *encoding) |
| | Recodes a kmer from a minimizer index in KFF format according to the given encoding. More...
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| gbwtgraph::Key64::value_type | vg::kff_recode (const uint8_t *kmer, size_t k, kff_recoding_t recoding) |
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| gbwtgraph::Key64::value_type | vg::kff_recode_trivial (const uint8_t *kmer, size_t k, size_t bytes) |
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| std::vector< gbwtgraph::Key64::value_type > | vg::kff_recode (const uint8_t *kmers, size_t n, size_t k, kff_recoding_t recoding) |
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| uint8_t | vg::kff_get (const uint8_t *kmer, size_t i) |
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| void | vg::kff_set (std::vector< uint8_t > &kmer, size_t i, uint8_t value) |
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| std::vector< uint8_t > | vg::kff_reverse_complement (const uint8_t *kmer, size_t k, const uint8_t *encoding) |
| | Returns the reverse complement of a KFF kmer. More...
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