|
| pair< int64_t, int64_t > | vg::mem_min_oriented_distances (const MaximalExactMatch &m1, const MaximalExactMatch &m2) |
| |
| bool | vg::operator== (const MaximalExactMatch &m1, const MaximalExactMatch &m2) |
| |
| bool | vg::operator< (const MaximalExactMatch &m1, const MaximalExactMatch &m2) |
| |
| ostream & | vg::operator<< (ostream &out, const MaximalExactMatch &mem) |
| |
| const string | vg::mems_to_json (const vector< MaximalExactMatch > &mems) |
| |
| vector< string::const_iterator > | vg::cluster_cover (const vector< MaximalExactMatch > &cluster) |
| |
| int | vg::cluster_coverage (const vector< MaximalExactMatch > &cluster) |
| |
| bool | vg::mems_overlap (const MaximalExactMatch &mem1, const MaximalExactMatch &mem2) |
| |
| int | vg::mems_overlap_length (const MaximalExactMatch &mem1, const MaximalExactMatch &mem2) |
| |
| bool | vg::clusters_overlap_in_read (const vector< MaximalExactMatch > &cluster1, const vector< MaximalExactMatch > &cluster2) |
| |
| int | vg::clusters_overlap_length (const vector< MaximalExactMatch > &cluster1, const vector< MaximalExactMatch > &cluster2) |
| |
| vector< pos_t > | vg::cluster_nodes (const vector< MaximalExactMatch > &cluster) |
| |
| bool | vg::clusters_overlap_in_graph (const vector< MaximalExactMatch > &cluster1, const vector< MaximalExactMatch > &cluster2) |
| |
| vector< MaximalExactMatch > | vg::translate_mems (const vector< MaximalExactMatch > &mems, const unordered_map< id_t, pair< id_t, bool > > &trans) |
| |
