- a -

• a_star() : vg::algorithms
• absent() : haplotypes_defaults
• add_alt_allele() : vg
• add_connecting_edges_to_subgraph() : vg::algorithms
• add_descendants_to_subgraph() : vg
• add_edges_only() : vg
• add_log() : vg
• add_log10() : vg
• add_nodes_and_edges() : vg
• add_path() : vg
• add_path_to_graph() : vg
• add_subpaths_to_subgraph() : vg::algorithms
• add_thread_edges_to_set() : vg
• add_thread_nodes_to_set() : vg
• addArbitraryTelomerePair() : vg
• adjacent_mappings() : vg
• adjustment() : haplotypes_defaults
• advance() : vg
• advance_split() : vg
• aligned_interval() : vg
• alignment_end() : vg
• alignment_ends() : vg
• alignment_from_length() : vg
• alignment_from_path() : vg
• alignment_is_valid() : vg
• alignment_middle() : vg
• alignment_path_offsets() : vg::algorithms
• alignment_quality_char_to_short() : vg::io
• alignment_quality_per_node() : vg
• alignment_quality_short_to_char() : vg::io
• alignment_refpos_to_path_offsets() : vg
• alignment_set_distance_to_correct() : vg
• alignment_start() : vg
• alignment_to_bam() : vg
• alignment_to_bam_internal() : vg
• alignment_to_gaf() : vg::io
• alignment_to_length() : vg
• alignment_to_sam() : vg
• alignment_to_sam_internal() : vg
• allAmbiguousToN() : vg
• allATGC() : vg
• allATGCN() : vg
• allele_to_string() : vg
• annotate_with_initial_path_positions() : vg::algorithms
• annotate_with_node_path_positions() : vg::algorithms
• annotate_with_path_positions() : vg::algorithms
• append_cigar_operation() : vg
• append_handle_graph() : handlegraph::algorithms
• append_mapping_sequence() : vg::algorithms
• append_multipath_alignment() : vg
• append_path() : vg
• append_path_handle_graph() : handlegraph::algorithms
• apply_orientations() : handlegraph::algorithms
• approx_gbwt_memory() : vg
• approx_graph_load_memory() : vg
• approx_graph_memory() : vg
• approx_num_vars() : vg
• are_equivalent() : handlegraph::algorithms
• are_equivalent_with_paths() : handlegraph::algorithms
• as_handle() : handlegraph
• as_integer() : handlegraph
• as_integers() : handlegraph
• as_net_handle() : handlegraph
• as_path_handle() : handlegraph
• assign_child_snarls_to_traversals() : vg
• augment() : vg
• augment_impl() : vg
• aux_array_to_string() : vg
• aux_val_to_string() : vg