vg
tools for working with variation graphs
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- g -
gaf_paired_interleaved_for_each() :
vg::io
gaf_paired_interleaved_for_each_parallel() :
vg::io
gaf_paired_interleaved_for_each_parallel_after_wait() :
vg::io
gaf_to_alignment() :
vg::io
gaf_unpaired_for_each() :
vg::io
gaf_unpaired_for_each_parallel() :
vg::io
gamma_ln() :
vg
gbwt_node_width() :
vg
gbwt_to_handle() :
vg
gbwt_to_pos() :
vg
gcsa_nodes_to_positions() :
vg
generate_haplotype() :
vg
genotype_svs() :
vg
geometric_sampling_prob_ln() :
vg
get_alignment_emitter() :
vg
get_annotation() :
vg
get_avg_baseq() :
vg
get_best_gbwtgraph_gfa_parsing_parameters() :
vg
get_current_vmem_kb() :
vg
get_depth_from_index() :
vg::algorithms
get_dir() :
vg::temp_file
,
xg::temp_file
get_end_of() :
vg
get_file_size() :
vg
get_fraction_of_ns() :
vg
get_gbwt() :
vg
get_graph_distance() :
vg::algorithms
get_id() :
vg
,
xg
get_input_file() :
vg
get_input_file_name() :
vg
get_is_rev() :
vg
,
xg
get_max_rss_kb() :
vg
get_max_vmem_kb() :
vg
get_metavar() :
vg::subcommand
get_metavar< bool >() :
vg::subcommand
get_metavar< double >() :
vg::subcommand
get_metavar< int >() :
vg::subcommand
get_metavar< int8_t >() :
vg::subcommand
get_metavar< size_t >() :
vg::subcommand
get_metavar< std::string >() :
vg::subcommand
get_next_alignment_from_fastq() :
vg
get_next_alignment_pair_from_fastqs() :
vg
get_next_interleaved_alignment_pair_from_fastq() :
vg
get_next_interleaved_record_pair_from_gaf() :
vg::io
get_next_record_from_gaf() :
vg::io
get_next_record_pair_from_gaf() :
vg::io
get_non_hts_alignment_emitter() :
vg::io
get_num_samples() :
vg
get_offset() :
vg
,
xg
get_option_id() :
vg::subcommand
get_or_estimate_coverage() :
vg
get_or_make_variant_id() :
vg
get_output_file_name() :
vg
get_path() :
vg
get_path_base_name() :
vg
get_proc_status_value() :
vg
get_read_distance() :
vg::algorithms
get_sequence_dictionary() :
vg
get_sequence_visits() :
vg
get_start_of() :
vg
get_stream_length() :
vg::io
get_stream_position() :
vg::io
get_thread_count() :
vg
,
xg
get_traversal_of_snarl() :
vg
get_traversal_order() :
vg
getReachableBridges() :
vg
getReachableBridges2() :
vg
gfa_to_handle_graph() :
vg::algorithms
gfa_to_path_handle_graph() :
vg::algorithms
golden_section_search() :
vg
graph_interval_to_string() :
vg
graph_to_gfa() :
vg
guess_parallel_gbwt_jobs() :
vg
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