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| size_t | vg::minimum_distance (const SnarlDistanceIndex &distance_index, pos_t pos1, pos_t pos2, bool unoriented_distance, const HandleGraph *graph) |
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| size_t | vg::maximum_distance (const SnarlDistanceIndex &distance_index, pos_t pos1, pos_t pos2) |
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| void | vg::fill_in_distance_index (SnarlDistanceIndex *distance_index, const HandleGraph *graph, const HandleGraphSnarlFinder *snarl_finder, size_t size_limit) |
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| SnarlDistanceIndex::TemporaryDistanceIndex | vg::make_temporary_distance_index (const HandleGraph *graph, const HandleGraphSnarlFinder *snarl_finder, size_t size_limit) |
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| void | vg::populate_snarl_index (SnarlDistanceIndex::TemporaryDistanceIndex &temp_index, pair< SnarlDistanceIndex::temp_record_t, size_t > snarl_index, size_t size_limit, const HandleGraph *graph) |
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| void | vg::subgraph_in_distance_range (const SnarlDistanceIndex &distance_index, const Path &path, const HandleGraph *super_graph, size_t min_distance, size_t max_distance, std::unordered_set< nid_t > &subgraph, bool look_forward) |
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| void | vg::subgraph_in_distance_range_walk_graph (const HandleGraph *super_graph, size_t min_distance, size_t max_distance, std::unordered_set< nid_t > &subgraph, vector< pair< handle_t, size_t >> &start_nodes, hash_set< pair< nid_t, bool >> &seen_nodes, const pair< nid_t, bool > &traversal_start) |
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| void | vg::subgraph_in_distance_range_walk_across_chain (const SnarlDistanceIndex &distance_index, const HandleGraph *super_graph, std::unordered_set< nid_t > &subgraph, net_handle_t current_node, size_t current_distance, vector< pair< handle_t, size_t >> &search_start_nodes, hash_set< pair< nid_t, bool >> &seen_nodes, const size_t &min_distance, const size_t &max_distance, bool checked_loop) |
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| void | vg::subgraph_containing_path_snarls (const SnarlDistanceIndex &distance_index, const HandleGraph *graph, const Path &path, std::unordered_set< nid_t > &subgraph) |
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| void | vg::add_descendants_to_subgraph (const SnarlDistanceIndex &distance_index, const net_handle_t &parent, std::unordered_set< nid_t > &subgraph) |
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| MIPayloadValues | vg::get_minimizer_distances (const SnarlDistanceIndex &distance_index, pos_t pos) |
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