types.hpp File Reference

#include <cstdint>
#include <iostream>
#include <sstream>
#include <tuple>
#include <handlegraph/types.hpp>

Namespaces
	vg
	std
	Hash functor to hash NodeSides using std::hash.

Typedefs
typedef handlegraph::nid_t	vg::id_t
typedef std::tuple< id_t, bool, offset_t >	vg::pos_t

Functions
pos_t	vg::make_pos_t (id_t id, bool is_rev, offset_t off)
	Create a pos_t from a Node ID, an orientation flag, and an offset along that strand of the node. More...
id_t	vg::id (const pos_t &pos)
	Extract the id of the node a pos_t is on. More...
bool	vg::is_rev (const pos_t &pos)
	Return true if a pos_t is on the reverse strand of its node. More...
offset_t	vg::offset (const pos_t &pos)
	Get the offset along the selected strand of the node from a pos_t. More...
id_t &	vg::get_id (pos_t &pos)
	Get a reference to the Node ID of a pos_t. More...
bool &	vg::get_is_rev (pos_t &pos)
	Get a reference to the reverse flag of a pos_t. More...
offset_t &	vg::get_offset (pos_t &pos)
	Get a reference to the offset field of a pos_t, which counts along the selected strand of the node. More...
bool	vg::is_empty (const pos_t &pos)
	Return true if a pos_t is unset. More...
pos_t	vg::empty_pos_t ()
	Get an unset pos_t. More...
pos_t	vg::reverse (const pos_t &pos, size_t node_length)
pos_t	vg::reverse_base_pos (const pos_t &pos, size_t node_length)
	Reverse a pos_t and get a pos_t at the same base, going the other direction. More...
std::ostream &	vg::operator<< (std::ostream &out, const pos_t &pos)
	Print a pos_t to a stream. More...
string	std::to_string (const vg::pos_t &pos)

Detailed Description

Contains typedefs for basic types useful for talking about graphs and basic operations using them.