vg
tools for working with variation graphs
vg
Haplotypes
Subchain
vg::Haplotypes::Subchain Member List
This is the complete list of members for
vg::Haplotypes::Subchain
, including all inherited members.
badness
(const gbwtgraph::GBZ &gbz) const
vg::Haplotypes::Subchain
distance
(const gbwtgraph::GBZ &gbz, size_t i) const
vg::Haplotypes::Subchain
end
vg::Haplotypes::Subchain
end_handle
() const
vg::Haplotypes::Subchain
inline
full_haplotype
enum value
vg::Haplotypes::Subchain
get_sequence
(size_t i) const
vg::Haplotypes::Subchain
inline
has_end
() const
vg::Haplotypes::Subchain
inline
has_start
() const
vg::Haplotypes::Subchain
inline
kmer_counts
vg::Haplotypes::Subchain
kmer_type
typedef
vg::Haplotypes::Subchain
kmers
vg::Haplotypes::Subchain
kmers_present
vg::Haplotypes::Subchain
load_v1
(std::istream &in)
vg::Haplotypes::Subchain
normal
enum value
vg::Haplotypes::Subchain
prefix
enum value
vg::Haplotypes::Subchain
sequences
vg::Haplotypes::Subchain
simple_sds_load
(std::istream &in)
vg::Haplotypes::Subchain
simple_sds_serialize
(std::ostream &out) const
vg::Haplotypes::Subchain
simple_sds_size
() const
vg::Haplotypes::Subchain
start
vg::Haplotypes::Subchain
start_handle
() const
vg::Haplotypes::Subchain
inline
subchain_t
enum name
vg::Haplotypes::Subchain
suffix
enum value
vg::Haplotypes::Subchain
to_string
() const
vg::Haplotypes::Subchain
type
vg::Haplotypes::Subchain
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