vg
tools for working with variation graphs
vg::MinimizerIndexParameters Member List

This is the complete list of members for vg::MinimizerIndexParameters, including all inherited members.

DEFAULT_ITERATIONSvg::MinimizerIndexParametersstatic
DEFAULT_THRESHOLDvg::MinimizerIndexParametersstatic
HASH_TABLE_MAX_WIDTHvg::MinimizerIndexParametersstatic
HASH_TABLE_MIN_WIDTHvg::MinimizerIndexParametersstatic
hash_table_widthvg::MinimizerIndexParameters
iterationsvg::MinimizerIndexParameters
kvg::MinimizerIndexParameters
kmer_counting(bool space_efficient_counting=false, size_t hash_table_width=0)vg::MinimizerIndexParametersinline
MAX_ITERATIONSvg::MinimizerIndexParametersstatic
minimizers(size_t k, size_t w)vg::MinimizerIndexParametersinline
paths_in_payloadvg::MinimizerIndexParameters
PAYLOAD_KEYvg::MinimizerIndexParametersstatic
PAYLOAD_NONE enum valuevg::MinimizerIndexParameters
payload_str(PayloadType type)vg::MinimizerIndexParametersstatic
PAYLOAD_ZIPCODES enum valuevg::MinimizerIndexParameters
PAYLOAD_ZIPCODES_WITH_PATHS enum valuevg::MinimizerIndexParameters
PayloadType enum namevg::MinimizerIndexParameters
progressvg::MinimizerIndexParameters
space_efficient_countingvg::MinimizerIndexParameters
syncmers(size_t k, size_t s)vg::MinimizerIndexParametersinline
thresholdvg::MinimizerIndexParameters
use_syncmersvg::MinimizerIndexParameters
use_weighted_minimizersvg::MinimizerIndexParameters
validate() constvg::MinimizerIndexParameters
verbose(bool progress=true)vg::MinimizerIndexParametersinline
w_or_svg::MinimizerIndexParameters
weighted(bool use_weighted_minimizers, size_t threshold=DEFAULT_THRESHOLD, size_t iterations=DEFAULT_ITERATIONS)vg::MinimizerIndexParametersinline
with_paths(bool paths_in_payload=true)vg::MinimizerIndexParametersinline
ZIPCODE_PAYLOAD_SIZEvg::MinimizerIndexParametersstatic
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